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Recipe: 698 JPred structs

created by gramps

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Name
698 JPred structs
ID
45887
Shared with
Public
Parent
None
Children
None
Created on
April 08, 2013 at 18:18 PM UTC
Updated on
April 08, 2013 at 18:18 PM UTC
Description

yields the structures predicted by the JPred site for the puzzle 698 AA string

Best for


Code


newprog = "698 JPred structs" -- -- autogenerated code local Struct_Types = { ["L"] = "Loop", ["E"] = "Sheet", ["H"] = "Helix", ["M"] = "Ligand" } function Make_All_Loop() selection.SelectAll() structure.SetSecondaryStructureSelected("L") print("everything has been changed to a loop") selection.DeselectAll() end -- function Make_All_Loop function Restore_One_Stuct(s_start,s_end,s_type) selection.SelectRange(s_start,s_end) print(Struct_Types[s_type].."("..s_start..","..s_end..")") structure.SetSecondaryStructureSelected(s_type) selection.DeselectAll() end -- function Restore_One_Stuct function Restore_Structs() Restore_One_Stuct(1,11,"L") Restore_One_Stuct(12,15,"E") Restore_One_Stuct(16,21,"L") Restore_One_Stuct(22,37,"H") Restore_One_Stuct(38,54,"L") Restore_One_Stuct(55,64,"H") Restore_One_Stuct(65,68,"L") Restore_One_Stuct(69,71,"H") Restore_One_Stuct(72,76,"L") Restore_One_Stuct(77,84,"H") Restore_One_Stuct(85,92,"L") Restore_One_Stuct(93,112,"H") Restore_One_Stuct(113,134,"L") end -- function Restore_Structs print("begin ",newprog) if structure.GetCount() == 134 then -- num segs match Make_All_Loop() Restore_Structs() else -- print warning line print("segment number mismatch -- no action taken") end print("end ",newprog)

Comments


gramps Lv 1

begin 698 JPred structs
everything has been changed to a loop
Loop(1,11)
Sheet(12,15)
Loop(16,21)
Helix(22,37)
Loop(38,54)
Helix(55,64)
Loop(65,68)
Helix(69,71)
Loop(72,76)
Helix(77,84)
Loop(85,92)
Helix(93,112)
Loop(113,134)
end 698 JPred structs

JPred link (good for about 48 hours):
http://www.compbio.dundee.ac.uk/www-jpred/results/jp_wbEfM6T/jp_wbEfM6T.html

puzzle 698 page:
http://fold.it/portal/node/994905

NOTE: these structs are just a guess, have a look at your start and edit your structs accordingly