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840: CASP ROLL Target R0046

Closed since over 8 years ago

Intermediate Overall Prediction CASP ROLL

Summary


Created
January 30, 2014
Expires
Max points
100
Description

This unsolved CASP ROLL target has 128 residues. After this puzzle closes, there will be one more round with server predictions. See the puzzle comments for secondary structure predictions.

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Comments


bkoep Staff Lv 1

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 77 & 78 are predicted to be part of a sheet. However, the Leucines at residues 20-22 are predicted to be in a helix!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).


If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:

  • lonely sheets,
  • lock and lower,
  • rebuild,
  • structure and rebuild,
  • control over clashing.