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Recipe: Acid Tweeker v1.3

Created by Rav3n_pl 70 1855

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Used 278 times with an average impact of 8497 points.

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Name:	Acid Tweeker v1.3
ID:	9499
Created on:	Sat, 08/28/2010 - 07:08
Updated on:	Mon, 12/13/2010 - 19:17
Description:	Added sphered shake to speed it up. More output, showing progress and gain. Best solution always in slot 3. Options at end - added possibility to user or skip some aas/segments. Opton to set segment start and end.

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Sat, 08/28/2010 - 14:14

#1

Rav3n_pl 70 1855

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Joined: 06/17/2010

Groups: Anthropic Dreams

What I change?

The goal is to make script faster.
Do do that, I optimize score checking by shaking/wiggling not entire protein, but only a radius around. This may cos a fraction of point, but is much faster.
Also added more output to see what and where it working.
Added one line that make this script usable on lingard puzzles - just uncomment it (is marked, at end of sctipt).

Sat, 08/28/2010 - 16:20

#2

Crashguard303 70 1855

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Joined: 09/18/2009

Groups: SETI.Germany

Yeah...

... do this too, to select segments close to ligand for mutating.

Sat, 08/28/2010 - 16:24

#3

Rav3n_pl 70 1855

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Joined: 06/17/2010

Groups: Anthropic Dreams

This script not have mutate

This script not have mutate usability.

Mon, 11/22/2010 - 11:43

#4

Rav3n_pl 70 1855

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Joined: 06/17/2010

Groups: Anthropic Dreams

uodate

Added options to skip/use segments or skip some aas.

Mon, 12/13/2010 - 19:21

#5

Rav3n_pl 70 1855

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Joined: 06/17/2010

Groups: Anthropic Dreams

1.3

- fixed little bugs ;]
- added option to simple set from-to
- set bigges sphere to shake after tweaking (from 10 to 12)
- cleaned code form X-es


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	Parent Acid Tweeker v1.1.2 by Rav3n_pl 70 1855


	Children My Acid Tweeker v1.1.3 by Chronosis 70 1108 Acid Tweeker v1.1.3-loop1 by dimension9 70 1855 Acid Tweek 113 by CharlieFortsCon... 34 58 Acid Tweeker v1.1.3 LCLB by Bletchley Park 10 40 Acid Tweeker v1.1.3.1, Acid Tweeker v1.1.3.2 by BootsMcGraw 15 9 Acid Tweeker 371, Acid Tweeker v1.2, Acid Tweaker R v1.1 by Rav3n_pl 70 1855 Thom Acid Tweeker v1.0, Thom Acid Tweeker v1.3 by Acid Tweeker v1.1.3 CHANGED by osergeeva 70 1855 Acid Tweeker v3 by Kit Cosby 70 1855 Acid Tweeker v1.2 skip agwyf by keypad5 70 1855 Acid385 by cstenstrom 70 1855 Acid Tweeker MUT-1.0, Acid Tweeker MUT-1.0, Acid Tweeker MUT v1.3 by Steve001 70 1855 Acid Tweeker v1.3 (reverse=, Acid Tweeker v1.3 (r) by kari102 70 1855 Acid Tweeker v1.3 by DC1600 70 1855 Acid Tweeker v1.3 edited by Fjoelsvider 70 1855 Acid Tweeker v1.2 300 320, Acid Tweeker v1.3 1-250, Acid Tweeker v1.3 410 - 425, Acid Tweeker v1.3 410-425, Acid Tweeker v1.3 421-430 by Ignacio 70 1855 Acid Tweeker 308-317 by oberburgermeister 70 1855 Acid Tweeker 308-317, Acid Tweeker v1.3 M, Acid Tweeker v1.3 inf by Tony Origami 70 1855 Acid Tweeker 192 -200 by Popijon 70 1855 Acid Tweeker v1.2 by rsosborne 70 1855 Acid Tweeker v1.3 fp, Acid Tweeker v1.3a by itskimo 70 1855 Acid Tweeker v1.3 by SabineA 70 1855 kim Acid Tweeker v1.3, kim Acid Tweeker v1.3, kim Acid Tweeker v1.3 brute, kim Acid Tweeker v1.3 heavy, kim Acid Tweeker v1.3 bf loop, 428 Acid Tweeker v1.3, 428 AD Acid Tweeker v1.3, kim Acid Tweeker v1.3 a, Acid Tweeker v1.3 60, kim Acid Tweeker v1.3 bf1, kim Acid Tweeker v1.3 test by krulon 70 1855 Acid Tweeker v1.3 y, Acid Tweeker v1.3 Brute by cbwest 70 396 Acid Tweeker v1.3 tweaked, Acid Tweaker v1.3 freeze fix, Acid Tweeker v1.3 for 425, Acid Tweeker v1.3 brute by wld333 70 1855 MMATv1.1.3 by mimi 70 1855 Acid Tweeker v1.3 fast, Acid Tweeker v1.3 ever, Acid Tweeker v1.3 bitspawn, Acid Tweeker v1.3 ever, Acid Tweeker v1.3 496, Acid Tweeker 524, Acid Tweeker v1.3 532, Acid Tweeker v1.3 539, Acid Tweeker v1.3 old brute by BitSpawn 70 1855 Acid Tweeker v1.4 by mberna00 70 1855 Acid Tweeker pass 3 only by Greg60 70 1855 Acid Tweeker v1.2 150-225 by anthunk 70 1855 Acid Tweeker v1.3expclash, Acid Tweeker v1.3exp, Mutate Acid Tweeker v1.3 by jamiexq 70 526 Acid Tweeker v1.3 Exp for 488, Acid Tweeker v1.3 for 488 by gmn 17 22 Acid Tweeker v1.3 490, Acid Tweeker v1.3 501, zztest Acid Tweeker v1.3, Acid Tweeker v1.3 for 549 by phi16 11 23 asdf(flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, 3of3(flipper) Acid Tweeker v1.3, 1234asdf(flipper) Acid Tweeker v1.3, asdfasdf(flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3, (flipper) Acid Tweeker v1.3 by mottiger 70 1855 496 gramps AT v1.3, Acid Tweeker v1.3 563 by Susume 70 647 Acid Tweeker v1.3 step 3 only by soaddict 70 1855 Acid Tweeker v1.3 -edit, Acid Tweeker v1.3 -edit, Acid Tweeker v1.3 -fragment by meatexplosion 70 1855 6 Acid Tweeker v1.3, Acid Tweeker seg52, Acid Tweeker v1.3 select by jakbinimbol 70 1855 C5 Acid Tweeker by karstenw 70 1855 AT v1.3 end 400 by dembones 70 1855 540 Acid Tweeker v1.3, 545 Acid Tweeker v1.3 by jermainiac 70 1855


	Authors Rav3n_pl 70 1855

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons