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Recipe: Total LWS 1.0.4
Created by Rav3n_pl 78 1437
4.666665
Your rating: None Average: 4.7 (6 votes)
Used 2059 times with an average impact of -50 points.

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Name: Total LWS 1.0.4
ID: 7507
Created on: Mon, 08/09/2010 - 23:26
Updated on: Mon, 08/09/2010 - 23:26
Description:

LWSing entire sctucture. Only can get score. ONLY for ENDGAME usage! Usage at end of sctipt



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Joined: 06/17/2010
what this is

Another implemetation of LWS (local wiggle sequence).
You decie how much sgmnts at once should be wiggled (options at end).
Script freezes segments and locally wigles spaces beetween.
Script NOT accepting loses - it loads recent best immediatly.
Looks like more than 7 sgmnts at once is useless.
ONLY for ENDGAME!
This method can give over 100pts on first usage BUT if you do it too soon - you hit the wall. LWSed proteine is more "stiff" and harder to manipulate.

After rebuilds, or when only 2-3 sgmnts are red in relative score coloring I reommend Precise LWS to wigle ONLY that areas.

Joined: 09/24/2012
Groups: Go Science
see V2 version with dialog box
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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons