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Recipe: Get SS
Created by LociOiling 9 3
Your rating: None Average: 5 (3 votes)


Name: Get SS
ID: 49160
Created on: Mon, 05/19/2014 - 15:57
Updated on: Mon, 05/19/2014 - 22:57

Prints the secondary structure in a single line, suitable for use with Set SS.

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Joined: 12/27/2012
Groups: Beta Folders
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After releasing this quick and dirty recipe, it turned out Brow42 had created something better a long time back. Brow's version of the recipe displays the primary and secondary structures, and lets you change them right in the recipe dialog. This is a lot better than my initial approach, which requires running one recipe to write out the structures, editing the scriptlog file to save the results, and running another recipe to restore the structures.

See "AA Copy Paste Compare v 1.1.1 -- Brow42" for a full-function recipe that works with both primary and secondary structure.

I created "SS Edit" as simpler version of Brow's recipe, that works only with secondary structures in a single dialog box.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons