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Recipe: EWR
Created by smholst 70 1795
Your rating: None Average: 5 (2 votes)


Name: EWR
ID: 48870
Created on: Sat, 04/12/2014 - 07:09
Updated on: Mon, 06/16/2014 - 10:08

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smholst's picture
User offline. Last seen 4 years 6 weeks ago. Offline
Joined: 03/09/2013
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evolution walker rebuild

The idea is to walk the protein along the SS and rebuild it partwise. It relies on a SS to be present on the protein.

Paramerters are:

step - INT - how many changes in the secondary structures are to be selected for the first rebuild.

startfrombest - BOOL - if the rebuilds should be started from best or from current fold.

ml - INT - maximum length of a rebuild. The selection will select until step changes in SS are met or ml is reached.

retry - INT - how many times to rebuild in order to get the "best" rebuild, not counting the starting position.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons