Back to Recipes Homepage
recipe picture
Recipe: Quaking Rebuild 2.0 filter
5
Your rating: None Average: 5 (3 votes)

Profile

Name: Quaking Rebuild 2.0 filter
ID: 48072
Created on: Wed, 02/05/2014 - 12:27
Updated on: Sun, 02/01/2015 - 12:57
Description:

Loop Rebuild modified so that after Rebuild/Shake/Wiggle etc: it performs some Local Quakes rather than Fuses in an attempt to improve the score.



Best For


Comments

Joined: 09/24/2012
Groups: Go Science
Adapted to New Chapter + dialogs including tvdl "WORKON" module

New to version 2.0:

1-optimized for New Chapter
2-added dialogs (defaults are what I prefer)
3-strong to adress all types puzzles (ligands, locked etc)
4-tvdl Dialog to select where to work on: Loops, Helixes, Sheets, add on segment before and after zones (good for small loops), + your own zone of the protein you want to select.
5-From zone length big to small (because there are less ocurences of big zones than small ones, you'll fast be on smaller ones)
6-This is automatically adjusted if zones selected are too small (e.g. "only loops" but there are only small loops)

7-Advanced easy editing options to be edited in the code
7a-default "loops with one non loop" is easy to edit, so that you can easily make a copy of the recipe with the default you prefer, e.g. "Only loop" or "All, helixes or sheets will be converted to loops".
7b-tvdl Dialog to select where to work on can quite easily be extended to more choice by editing the recipe: all possibilities to select are embedded in the tvdl module.
7c-I added to the generic tvdl module a function to add segments before and after the zones

Want to try?
Add to Cookbook!
To download recipes to your cookbook, you need to have the game client running.
Parent
Children
Authors
Sitemap

Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons