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Recipe: gentle_compress_V1
Created by robgee 7 6
Your rating: None Average: 5 (1 vote)


Name: gentle_compress_V1
ID: 47673
Created on: Sat, 01/04/2014 - 11:36
Updated on: Sat, 01/04/2014 - 19:36

Gentle compress.

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robgee's picture
User offline. Last seen 11 hours 17 min ago. Offline
Joined: 07/26/2013
gentle compress

This is a very simple compressor recipe.
It bands the stucture symmetricaly then does a wiggle at low band strength,
followed by shake and wiggle at 3 different CI.
It has the options (in the code):
To change amount of cycles(a single run of recipe).[default is 3.]
To change band strength.[default is 0.04]
Recipe seems to work best on structures that have some symmetry.
Tried and tested on Puzzle:826.
Suggestions or feedback would be welcome.
[This is beginners code, it works, but not very well]
N.B on small proteins, best to do another wiggle after its finished.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons