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Recipe: 646 comment structs
Created by gramps 46 1293
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Name: 646 comment structs
ID: 44411
Created on: Thu, 10/25/2012 - 05:33
Updated on: Thu, 10/25/2012 - 12:33
Description:

Yields predicted structures for puzzle 646 which refers to the comment under puzzle 641



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gramps's picture
User offline. Last seen 8 years 6 weeks ago. Offline
Joined: 12/16/2010
recipe output

begin 646 comment structs
everything has been changed to a loop
Helix(1,5)
Loop(6,15)
Sheet(16,18)
Loop(19,23)
Helix(24,37)
Loop(38,44)
Helix(45,49)
Loop(50,53)
Sheet(54,58)
Loop(59,60)
Sheet(61,62)
Loop(63,64)
Helix(65,82)
Loop(83,93)
Sheet(94,95)
Loop(96,98)
Helix(99,99)
Loop(100,100)
Helix(101,101)
Loop(102,107)
Sheet(108,113)
Loop(114,114)
end 646 comment structs

Here's the puzzle 646 page, noting the the comment links to the comment for puzzle 641:
https://fold.it/portal/node/993800

comment structs creation how-to:
http://fold.it/portal/recipe/44263#comment-19933

gramps's picture
User offline. Last seen 8 years 6 weeks ago. Offline
Joined: 12/16/2010
discussion

To explore the starts I first ran public Recipe:
Rav3n_pl SBS v1.2
https://fold.it/portal/recipe/22173
SBS == "Select Best Start"

Saving in slot 1 start points: 5909.4865582783
Saving in slot 2 start points: 4213.0858292331
Saving in slot 3 start points: 2707.5579279384
Saving in slot 4 start points: 4577.7364242556
Saving in slot 5 start points: 2238.9256938367
Saving in slot 6 start points: 4851.3680018741
Saving in slot 7 start points: 3428.9478880771
Found 7 starts. Searching for best.
Save 1 start points: 5909.4865582783
Stabilzed, fuzed and saved at: ???
Save 2 start points: 4213.0858292331
Stabilzed, fuzed and saved at: ???
Save 3 start points: 2707.5579279384
Stabilzed, fuzed and saved at: ???
Save 4 start points: 4577.7364242556
Stabilzed, fuzed and saved at: ???
Save 5 start points: 2238.9256938367
Stabilzed, fuzed and saved at: ???
Save 6 start points: 4851.3680018741
Stabilzed, fuzed and saved at: ???
Save 7 start points: 3428.9478880771
Stabilzed, fuzed and saved at: ???
Restoring best score. Happy folding ;]

Now to visit each of the starts I used public Recipe:
Quicksave extend V1.0
http://fold.it/portal/recipe/44020

Note: used "load" function, not "save"!

annotations for above run (used hover-Tab to identify the start names):

quark1 start points: 5909.486
Stabilzed, fuzed and saved at: ??? -- your mileage may vary ;-)

quark2 start points: 4213.085
Stabilzed, fuzed and saved at: ???

quark3 start points: 2707.557
Stabilzed, fuzed and saved at: ???

quark4 start points: 4577.736
Stabilzed, fuzed and saved at: ???

quark5 start points: 2238.925
Stabilzed, fuzed and saved at: ???

zhang4 start points: 4851.368
Stabilzed, fuzed and saved at: ???

zhang5 start points: 3428.947
Stabilzed, fuzed and saved at: ???

This "646 comments structs" recipe might be applied initially to see how the starts conform to the predicted structs. Additionally, it might be possible to use public Recipe:
Note 10 worst V1.0
http://fold.it/portal/recipe/43913

to help identify potentially repairable kinks in the lower scoring starts. Wouldn't be any fun if all the SBS users ended up with the same one!

gramps's picture
User offline. Last seen 8 years 6 weeks ago. Offline
Joined: 12/16/2010
quark2 example

Start quark2 came in about the middle of the pack in the above. After applying this comment structs recipe, Note'ing the worst 3 segs, setting view to rainbow (deselecting most of the rest of the view stuff) and Tab-hovering the first segment we get the following pic:
http://fold.it/portal/files/chatimg/irc_235191_1351181990.png

That captures the quark2 in its stabilized/fuzed state from SBS.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons