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Recipe: Gargleblast Your Mojo 1.6.0
Created by truestone 90 1808
4.4
Your rating: None Average: 4.4 (40 votes)

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Name: Gargleblast Your Mojo 1.6.0
ID: 43784
Created on: Sat, 08/04/2012 - 23:48
Updated on: Sun, 11/04/2012 - 20:39
Description:

Structure-agnostic wiggling and shaking with systematically decreasing clashing importance. Each iteration starts from the initial solution or the best improvement since, so you can stop at any moment. Will stop automatically after 20 fruitless passes. Single step undo. Preserves bands, CI, secondary structure. Best after a rebuild/pull on a slightly stable structure or as end game.



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Joined: 03/18/2012
Groups: Gargleblasters
Renamed from Get Your Mojo Working

Used to be called "Get Your Mojo Working" (without version number).
Changed input and output: fewer and more clear input options, nicer output (I think). "Effort 1" now equivalent to setting initial ci to zero, "Effort 3" disappeared.

Joined: 03/18/2012
Groups: Gargleblasters
version 1.2

Disabled the "quick" iterations which seemed to win points in the short term and freeze in the long. Different starting values for 2nd and further passes.

Joined: 03/18/2012
Groups: Gargleblasters
version 1.3 & 1.4

Single step undo, mutation in applicable puzzles, more efficient wiggling up (stops earlier if extrapolated score is too low, continues longer otherwise), better formatting

Joined: 03/18/2012
Groups: Gargleblasters
version 1.4.1

Fix error about min_worthy_score being undefined

Joined: 03/18/2012
Groups: Gargleblasters
version 1.4.2

Another whopper of a bug fixed: wrong recentbest restored on any unsuccessful iteration

Joined: 03/18/2012
Groups: Gargleblasters
version 1.4.3

Local wiggling checkbox turned off by default. Added newlines in description to display suitably as tooltip.

Joined: 03/18/2012
Groups: Gargleblasters
version 1.5.0

Checkboxes (and code) for bands and mutability, if applicable

Joined: 03/18/2012
Groups: Gargleblasters
version 1.6.0

Slightly faster (less keen to repeat wiggles). Now with totally overboard generic column alignment of text - reverse engineered the proportional font of the output window (there is no kerning I can spot, but no consistent font sizing to the pixel either).

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons