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Recipe: BitSpawn SecondaryStructure v0.3
Created by BitSpawn 83 1767
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Name: BitSpawn SecondaryStructure v0.3
ID: 41394
Created on: Sat, 05/05/2012 - 13:04
Updated on: Sat, 05/05/2012 - 21:24
Description:

Search for alpha helix, beta sheet, polyproline.



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Joined: 08/09/2010
inside

Fixed bug with sheets
Code commented

Search:
- MALEK
- Large aromatic residues and β-branched amino acids for sheets
- Prolines for polyproline
- Methionine, Alanine, Leucine, Glutamic acid, Glutamine, Lysine for helix
- Threonine, Isoleucine, Valine, Phenylalanine, Tyrosine, Tryptophan for sheets
- Little expansion and normalization

TODO: study Glycine, Serine, Proline, Asparagine and Aspartic for disorder.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons