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Recipe: BitSpawn SecondaryStructure v0.2
Created by BitSpawn 70 1877
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Name: BitSpawn SecondaryStructure v0.2
ID: 41386
Created on: Sat, 05/05/2012 - 10:12
Updated on: Sat, 05/05/2012 - 19:58
Description:

Search for alpha helix, beta sheet, polyproline.



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Joined: 08/09/2010
inside

Code commented.
Priority to the sheets.
Search:
- MALEK
- Large aromatic residues and β-branched amino acids for sheets
- Prolines for polyproline
- Methionine, Alanine, Leucine, Glutamic acid, Glutamine, Lysine for helix
- Threonine, Isoleucine, Valine, Phenylalanine, Tyrosine, Tryptophan for extending sheets
- After that same for extending helix
- Normalization

TODO: study Glycine, Serine, Proline, Asparagine and Aspartic for disorder.

Joined: 08/09/2010
needs upgrade

There is a conflict with Lysine. Soon v0.3

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons