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Recipe: BiS Wiggle 1.2 - Brow42
Created by brow42 82 419
4.068965
Your rating: None Average: 4.1 (58 votes)

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Name: BiS Wiggle 1.2 - Brow42
ID: 37466
Created on: Sun, 01/15/2012 - 19:55
Updated on: Sat, 09/15/2012 - 21:37
Description:

Wiggle with random bands to space. New defaults from 1.0. Now ignores locked segs. Removes bands on cancel.



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brow42's picture
User offline. Last seen 23 hours 33 min ago. Offline
Joined: 09/19/2011
Groups: None
Maybe good for the end game

When I can't get any more points, I would take one band to space and pull it around with the mouse while wiggling and seeing if the score would go up. This will maybe do sort of the same thing, with small random bands followed by a wiggle and restore recent best. You can set the band strength, the band length, how many bands to make, and how often to restore. You can band to the backbone or the sidechain or both.

brow42's picture
User offline. Last seen 23 hours 33 min ago. Offline
Joined: 09/19/2011
Groups: None
Recent Changes

* Version 1.0.1 Jan. 17 2012 Brow42
* New defaults, fixed random sphere to be correct (not hemisphere)

* Version 1.0.2 Mar. 6 2012 Brow42
* Added option to reverse bands and wiggle

* Version 1.1 Apr. 27 2012 Brow42

* Now checks for locked segments and skips them
* Now bands terminal segments correctly
* Removes bands on cancel

1.1 posting pending server certificate working resolution.

brow42's picture
User offline. Last seen 23 hours 33 min ago. Offline
Joined: 09/19/2011
Groups: None
Patch 1.1.1

Version 1.1.1 Sep 14 2012 Brow42

Checkbox to allow banding to locked segments
Name changed to BiS Wiggle to avoid confusion with Zero Length Bands http://fold.it/portal/recipe/37147
WiggleAll changed to 2 iterations as per jflat advice

Wiggle should always be an even number because step 1 of wiggle minimizes energy and step 2 of wiggle restores constraints.

Joined: 04/11/2013
Brow. I found that stopping

Brow. I found that stopping this script with every minor gain and then starting it again with the same settings seems benificial. If I was proficient at programming I would mske it do this automatically. Then I would let it up the ci and start again.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons