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Recipe: Loop rebuild 1.0
Created by spvincent 32 25
Your rating: None Average: 4.5 (57 votes)
Used 2606 times with an average impact of 46581 points.


Name: Loop rebuild 1.0
ID: 2408
Created on: Thu, 05/06/2010 - 14:01
Updated on: Thu, 05/06/2010 - 21:01

Best run overnight. Change parameters at top of script to taste. A work in progress.

Best For


Joined: 09/18/2009
Groups: SETI.Germany

I like the strategy of this script.

Joined: 06/23/2009
Good script, but . . .

I really like this one. The only drawback I see from it is when I am trying to optimize a different alignment, the "Restore Very Best" step that it does will revert it back to the previous version. If a "Long Term Recent Best", or a "Short Term Very Best" existed, I would like to see that implemented so that I don't lose my new alignment.
Overall though, this script has bumped my rank up a considerable number of times. Good work!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons