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Recipe: SimpleRebuilder_0.1
Created by lilovip 51 1376
Your rating: None Average: 4.1 (40 votes)
Used 2099 times with an average impact of 31032 points.


Name: SimpleRebuilder_0.1
ID: 2236
Created on: Sun, 02/28/2010 - 17:19
Updated on: Mon, 03/01/2010 - 01:19

Finds and rebuilds loop sequence (all segments between helices and sheets), then shakes, wiggles and restores recent best. Does this few times for every loop sequence and many times for whole protein; both values can be changed in script. There are some optimizations. Actually, this is script "Run it and go to bad". Trick: you can divide whole protein (as one big loop) by some single helix segments, and run this script. TODO: add algorithm for auto dividing too long loop sequences. Build: 19

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons