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Recipe: Worm LWS v2
Created by Rav3n_pl 142 853
4.833335
Your rating: None Average: 4.8 (6 votes)
Used 4 times with an average impact of -6 points.

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Name: Worm LWS v2
ID: 14605
Created on: Wed, 10/27/2010 - 14:17
Updated on: Sat, 02/05/2011 - 19:32
Description:

Performing Local Wiggle Sequences by patterns. Start and end segment can be changed. After positive wiggle(1) test it makes more lws (20 by default).



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Joined: 06/17/2010
v2

Changed approach - not checking change in points every wiggle.
1. test by local_wiggle(1)
2. if gain do local_wiggle(x) times
3. restore recent best

Restoring every time because sometimes wiggle(1) makes points and wiggle(20) making some up then down!. This way we always have maximum gain.

Length of second wiggle can be adjusted, also start and end segment and wiggling pattern.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons