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Recipe: CG303 Band Center V1.0
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Name: CG303 Band Center V1.0
ID: 14198
Created on: Tue, 10/19/2010 - 04:32
Updated on: Tue, 10/19/2010 - 11:32
Description:

Script request by Mat747. Like some others, this script finds the puzzle center segment and bands the other segments to it. But here are many filter, band and tweak options: You can select which segments can be banded by their index, by amino-acid-letter, hydrophobic and hydrophilic ones. You can decide if the applied band length is a fixed value or relative to the spatial distance of the segments. You can even change the band strength. This example bands hydrophobics this way, that they can get closer to the center segment and hydrophilics that they can get more apart from it. Note that this script just applies bands, it does no shake or wiggle.



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Joined: 09/18/2009
Groups: SETI.Germany
That's how the code does look like
Joined: 09/18/2009
Groups: SETI.Germany
More...

If you don't want to band to the detected center segment, change line 222:

target_index=check_segment_index("center")
to
target_index=x
where x is the segment index number you want to be considered as "center segment".

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons