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Recipe: CG303 Structure finder
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Name: CG303 Structure finder
ID: 13056
Created on: Mon, 10/04/2010 - 01:50
Updated on: Mon, 10/04/2010 - 08:50
Description:

Finds cohesive secondary structures in a puzzle. This example finds all sheet sections in a puzzle and shows first and last segment of them. See script link for details.



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Joined: 09/18/2009
Groups: SETI.Germany
That's how the code does look like
Joined: 09/18/2009
Groups: SETI.Germany
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Maybe there is a simpler way to find cohesive structures.
I'm thinking about using two segment index tables (one for start and one for end point), fetching only information if the requested structure is there, and then only working with the start/end segment lists by throwing out enclosed index numbers.

Joined: 09/18/2009
Groups: SETI.Germany
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Did this in the new version:
http://fold.it/portal/recipe/13081

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons