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Recipe: nicm25.hti.ABChecker v1.01
Created by Nicm25 70 133
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Name: nicm25.hti.ABChecker v1.01
ID: 104862
Created on: Sun, 05/30/2021 - 11:38
Updated on: Wed, 06/30/2021 - 12:05
Description:

judging only by bending of backbone! (nullable segment select, number threshold, boolean highquality)



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Nicm25's picture
User offline. Last seen 22 min 9 sec ago. Offline
Joined: 04/22/2020
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ABChecker description

thank you for your interest.
this is by product of bootstrap, where i prepare tools myself from beginning
and my personal 'Hand Tools, Information such package'(hti).

In this little script, setting secondary structure based on shape of backbone
set like straight line is sheets, and bending is helices, else is loops.
3 arguments
select: currently selected segment will be this argument(not in dialog), if none select is 'all apply'.
threshold: when biased ratio of helices(alpha) and sheets(beta), you can adjust to balance.
range: 0.0-1.0, default: 0.5, function: 1.0 is alpha side, 0.0 is beta side
highquality: additional checking backbone distortion on assumption that it has already been idealized.
default: false, function: false is none, true is additional checking
int return: whether it was successfully. function: 0 is okay, else is problem

Nicm25's picture
User offline. Last seen 22 min 10 sec ago. Offline
Joined: 04/22/2020
Groups: None
Update ver 1.01

improved to undo history into one task.
other that, there are no changes to specifications.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons