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Recipe: GetCuts
Created by LociOiling 4 1
Your rating: None Average: 3.7 (3 votes)


Name: GetCuts
ID: 104236
Created on: Sat, 12/19/2020 - 13:22
Updated on: Sat, 12/19/2020 - 21:22

Demonstrate structure.GetCuts

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LociOiling's picture
User offline. Last seen 6 hours 56 min ago. Offline
Joined: 12/27/2012
Groups: Beta Folders
quick demo for structure.GetCuts

This recipe demonstrates the new structure.GetCuts call, which lists open cutpoints.

The recipe prints each open cutpoint, then calls structure.DeleteCut to close it.

There's no indication of success or failure from structure.DeleteCut, so the recipe calls structure.GetCuts to see if any cuts remain open.

The structure.GetCuts call itself seems fine, but structure.DeleteCut will close any cutpoint, even where the ends are too far apart to close manually. You'll end up with a funny-looking protein and two segments with bad ideality subscores.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons