Back to Recipes Homepage
recipe picture
Recipe: Complex_Remix v0.9
Created by Serca 103 188
3.81818
Your rating: None Average: 3.8 (11 votes)

Profile

Name: Complex_Remix v0.9
ID: 103304
Created on: Sun, 03/15/2020 - 15:25
Updated on: Sun, 03/15/2020 - 22:27
Description:

Remixes 2 large selections simultaneously.

Before starting script 2 selections should be made by user manually! Script Remixes both selections together, iterating every possible combination between the Remix solutions for these 2 selections. Scores and fuzes all the solutions and chooses the best one. If the selection length is 1 (one residue is selected for any of two selections), script adds neighborhood to selection making selection length 5 residues. If no selections found it increases selection length.

This script is usefull for building local mojo, packing 2 close loops very good. It's perfect for searching optimal solution of the 2 cysteines. Just select 2 close cysteines (ctrl+click) and run this script. Better band the cysteine sidechain endings with the strong short band (length 0.9 strength 4) to make good cysteine bridge on fuze.



Best For


Comments

Serca's picture
User offline. Last seen 12 weeks 6 days ago. Offline
Joined: 02/03/2020
Groups: Go Science
Here is typical script output


Selection1 is too short. Setting length to 5
Selection2 is too short. Setting length to 5
Sel1 starts at 11 length 5 / sel2 starts at 35 length 5
No solutions for selection1. Setting length to 6
Got 3 solutions for 1st selection
Got 19 solutions for 2nd selection
Have 3 * 19 = 57 fuzes to go
Remix 1 - 1 : slot 5 score 9425.38 *best
Remix 1 - 2 : slot 6 score 9424.75
Remix 1 - 3 : slot 7 score 9397.59
Remix 1 - 4 : slot 8 score 9367.81
Remix 1 - 5 : slot 9 score 9429.13 *best
Remix 1 - 6 : slot 10 score 9485.06 *best
Remix 1 - 7 : slot 11 score 9458.42
Remix 1 - 8 : slot 12 score 9332.23
Remix 1 - 9 : slot 13 score 9411.58
Remix 1 - 10 : slot 14 score 8875.3
Remix 1 - 11 : slot 15 score 9484.84
Remix 1 - 12 : slot 16 score 9455.54
Remix 1 - 13 : slot 17 score 9503.47 *best
Remix 1 - 14 : slot 18 score 9464.91
Remix 1 - 15 : slot 19 score 9407.39
Remix 1 - 16 : slot 20 score 9404.75
Remix 1 - 17 : slot 21 score 9508.16 *best
Remix 1 - 18 : slot 22 score 9365.01
Remix 1 - 19 : slot 23 score 9500.32
Have 2 * 19 = 38 fuzes to go
Remix 2 - 1 : slot 5 score 9482.53
Remix 2 - 2 : slot 6 score 9444.31
Remix 2 - 3 : slot 7 score 9448.99
Remix 2 - 4 : slot 8 score 9422.24
Remix 2 - 5 : slot 9 score 9462.3
Remix 2 - 6 : slot 10 score 9453.6
Remix 2 - 7 : slot 11 score 9483.11
Remix 2 - 8 : slot 12 score 9287.09
Remix 2 - 9 : slot 13 score 9417.29
Remix 2 - 10 : slot 14 score 8973.66
Remix 2 - 11 : slot 15 score 9440.95
Remix 2 - 12 : slot 16 score 9470.8
Remix 2 - 13 : slot 17 score 9511.33 *best
Remix 2 - 14 : slot 18 score 9467.12
Remix 2 - 15 : slot 19 score 9445.43
Remix 2 - 16 : slot 20 score 9451.98
Remix 2 - 17 : slot 21 score 9516.46 *best
Remix 2 - 18 : slot 22 score 9380.64
Remix 2 - 19 : slot 23 score 9464.28
Have 1 * 19 = 19 fuzes to go
Remix 3 - 1 : slot 5 score 9481.42
Remix 3 - 2 : slot 6 score 9446.22
Remix 3 - 3 : slot 7 score 9487
Remix 3 - 4 : slot 8 score 9375.82
Remix 3 - 5 : slot 9 score 9507.69
Remix 3 - 6 : slot 10 score 9457.63
Remix 3 - 7 : slot 11 score 9482.97
Remix 3 - 8 : slot 12 score 9330.81
Remix 3 - 9 : slot 13 score 9419.65
Remix 3 - 10 : slot 14 score 8928.37
Remix 3 - 11 : slot 15 score 9454.53
Remix 3 - 12 : slot 16 score 9471.83
Remix 3 - 13 : slot 17 score 9465.82
Remix 3 - 14 : slot 18 score 9470.14
Remix 3 - 15 : slot 19 score 9444.45
Remix 3 - 16 : slot 20 score 9463.66
Remix 3 - 17 : slot 21 score 9475.67
Remix 3 - 18 : slot 22 score 9426.66
Remix 3 - 19 : slot 23 score 9469.54
Max score 9516.46 from slot 21
Fuzing best position

Joined: 09/29/2016
Groups: Gargleblasters
Request: Instead of having us

Request: Instead of having us enter Interface Mode to make the selection (since annoyingly, there's no hotkey to quickly toggle that mode), could you also have it look for two Frozen segments to treat as selections and have it translate it into a selection through the API?
I don't remember which recipe it is that I have, but that's how it worked by being able to use Selection or "Freeze-Proxy" (for lack of better word lol). As I recall, it also have a lead-up dialog box to confirm with the user to use Frozen Segments as "Selected" points. So you could even offer that as well in case someone wants to use this while still having frozen points.


Alternatively... Since pressing Tab (for Segment Information) works even with a recipe running, you could offer input boxes in the configuration dialog window that asks for Segment Number in lieu of u using Frozen ones entirely.

Thanks! :)
-Form

Joined: 10/28/2013
Groups: Go Science
Selection

I cant figure out how to make the initial selection.

Serca's picture
User offline. Last seen 12 weeks 6 days ago. Offline
Joined: 02/03/2020
Groups: Go Science
Please wait next version for dialog input

> I cant figure out how to make the initial selection.

You need to switch to Selection Interface in Menu for that and make selection with ctrl+click or shift+click

Formula350, thank you for your opinion. I understand that Original Interface is not good to run this script. Will be updated soon.

Want to try?
Add to Cookbook!
To download recipes to your cookbook, you need to have the game client running.
Parent

none

Children

none

Authors
Sitemap

Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons