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Recipe: Toolbox 1.4
Created by MurloW 46 1390
Your rating: None Average: 4.5 (26 votes)


Name: Toolbox 1.4
ID: 102996
Created on: Sat, 01/19/2019 - 19:52
Updated on: Mon, 03/30/2020 - 08:56

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MurloW's picture
User offline. Last seen 15 weeks 6 days ago. Offline
Joined: 11/21/2012

Added 'Fast' Relax to MaxCI, basically fuzes scaled to MaxCI value, based on the Fast Relax protocol.
Added Work existing bands for a bit, 3 rounds of bandpull and test.
Added Short round of BandFuze, 2 rounds of every checked bander for a max of 8 rounds total.
Added Bruteforce selected AAs, tries every Amino Acid on a segment and does a local shake n wiggle.
Polar(1) tries only AAs that can form hbonds, Similar(2) tries only hydrophobic or -philic AAs similar to the original AA.
Added Rotamer Test for HBond network puzzles.
More Cut & Wiggle customizability.

Various small stuff and probably things I forgot about

MurloW's picture
User offline. Last seen 15 weeks 6 days ago. Offline
Joined: 11/21/2012

bugfix in spacebands handling of locked segments
added wiggle/test after bruteforce AAS cycles option

Joined: 03/08/2012
Groups: None
Misspelling error Desperate level 4

There is/was an error in Desperate level 4:
instead MutateSidechainsSAll(1) -> 1 Char. S is too much !!

if Dsp == 4 then
structure.MutateSidechainsAll(1) Check()

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons