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Name:	NetSurfP 1.1
ID:	102282
Created on:	Sat, 01/14/2017 - 01:01
Updated on:	Sat, 01/14/2017 - 09:01
Description:	Convert NetSurfP webpage output into secondary structure prediction and copy-and-paste spreadsheet format. V1.1 handles blank lines gracefully and adds a confidence prediction.

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Sat, 01/14/2017 - 09:11

LociOiling 2 1

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Joined: 12/27/2012

Groups: Anthropic Dreams

adds confidence prediction, handles blank lines gracefully

NetSurfP 1.1 reformats the secondary structure prediction from NetSurfP to make it more useful to Foldit players.

NetSurfP 1.1 adds secondary prediction confidence to the output of NetSurfP 1.0. For each segment in the input, the confidence ranges from 0 to 9, with 0 being low confidence. The confidence is simply the first digit of the probability of the winning structure prediction for that segment, so 0.994 gives confidence "9", and 0.590 gives "5".

Sample scriptlog output:

---secondary structure prediction---
LHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHLLLLLEEEELLLLEEEEEELLLLLLLLLL
---prediction confidence---
96899999999988758888558899999999987668996688758865678856798666789

NetSurfP 1.1 also ignores blank lines in the input. These blank lines may occur when copying from the NetSurfP output page.

See NetSurfP 1.0 for usage.


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	Parent NetSurfP 1.0 by LociOiling 2 1


	Children NetSurfP 1.2 by LociOiling 2 1


	Authors LociOiling 2 1