Profile
Best ForComments
Thu, 08/13/2015 - 20:38
#2
How to use shiftit0?
The image on the left below shows the results of a shiftit0 run done on puzzle 1119 after resetting the puzzle, resetting its secondary structure (not auto structures), and using clashing importance=1, low wiggle power, no frozen, and no bands. This run used the default settings for shiftit0. The image on the right was made by resetting the puzzle, and resetting its secondary structure (not auto structures). Both images were colored by rainbow and rendered as cartoon without showing the sidechains. The Recipe Output (from scriptlog.default.xml) from the above shiftit0 run is listed below:
Thu, 08/13/2015 - 20:50
#3
shiftit0 has many input options:
shiftit0 is still in the development stage, One goal is to adapt shiftit0 to If you have suggestions for future versions of shiftit0, Thanks! |
|
The goal of shiftit0 is to move each alpha-carbon
to another alpha-carbon's position using bands.
It was made in response to the following posts:
Allow Delete and Add on design puzzles
http://fold.it/portal/node/998416
Insert/Delete in Design Puzzles
http://fold.it/portal/node/998066
Tool suggestions
http://fold.it/portal/node/2001025#comment-30881
where susume said:
To advance the amino acids one place along the spiral of a helix,
change the helix to sheet and use the tweak tool to advance the
curled sheet one position. Then change it back to helix.
Create hoops (like bands, but the protein can slide through them)
https://fold.it/portal/node/992670
Power Shift 1.0.1 - Brow42
http://fold.it/portal/recipe/44189