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939: CASP11 Target Ts810: Sparse Data Contacts
Status: Closed

Summary

Name: 939: CASP11 Target Ts810: Sparse Data Contacts
Status: Closed
Created: 07/15/2014
Points: 100
Expired: 07/19/2014 - 11:00
Difficulty: Intermediate
Description: For this target, the CASP11 organizers have provided "sparse" experimental data about possible contacts in the protein. Contacts are scored with the Contact Map filter in this puzzle, and there is an upper limit of 6350 possible points from the filter. The starting structure is an extended chain, and secondary structure predictions can be found below in the puzzle comments.
Categories: CASP11, Overall, Predicted Contacts, Prediction

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Comments

bkoep's picture
User offline. Last seen 3 hours 34 min ago. Offline
Joined: 11/15/2012
Groups: None
Secondary structure predictions

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

brow42's picture
User offline. Last seen 6 hours 4 min ago. Offline
Joined: 09/19/2011
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"sparse"

That's definitely "sparse".

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons