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938: CASP11 T0838: WeFold Round
Status: Closed


Name: 938: CASP11 T0838: WeFold Round
Status: Closed
Created: 07/14/2014
Points: 100
Expired: 07/20/2014 - 21:00
Difficulty: Intermediate
Description: For this 133 residue CASP11 Target, T0838, we are giving you 2 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle between both aligned models and they are available in the Alignment Tool so you can use partial threading between them. Secondary structure predictions are in the puzzle comments.
Categories: CASP11, Overall, Prediction

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beta_helix's picture
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Secondary structure predictions:

NOTE: Numbering is off as the first 21 residues were trimmed, so this secondary structure prediction might help:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the models that have been provided in the puzzle.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons