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906: HIV-1 Env gp41 CASP11 T0787: WeFold Round
Status: Closed

Summary

Name: 906: HIV-1 Env gp41 CASP11 T0787: WeFold Round
Status: Closed
Created: 06/02/2014
Points: 100
Expired: 06/09/2014 - 12:00
Difficulty: Intermediate
Description: This 153 residue CASP11 Target is part of the HIV-1 Env complex. We are giving you 4 different server predictions selected by our WeFold collaborators. Resetting the puzzle will cycle through each model and they are available in the Alignment Tool so you can use partial threading between them.
Categories: CASP11, Overall, Prediction

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Comments

beta_helix's picture
User offline. Last seen 5 hours 56 min ago. Offline
Joined: 05/09/2008
Groups: None
Secondary structure predictions:

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the server model that has been provided in the puzzle.
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If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:
- lonely sheets,
- lock and lower,
- rebuild,
- structure and rebuild,
- control over clashing.
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More information about this CASP Target:
"CASP targets T0787 (gp41) and T0788 (gp120) are two parts of the HIV-1 Env complex, comprising three gp120 subunits and three gp41 subunits."
http://predictioncenter.org/casp11/target.cgi?id=36

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