beta_helix's picture
User offline. Last seen 7 hours 50 min ago. Offline
Joined: 05/09/2008
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Additional info for this target

Here is the RosettaServer link (including secondary structure information):

Here are the Starting Scores for this puzzle:
(press "Reset Puzzle" to cycle through each RosettaServer model):

1. 8537.747
2. 8511.046
3. 6297.225
4. 7992.411
5. 7616.19

Secondary structure predictions from the SAM server will be posted soon...

bkoep's picture
User offline. Last seen 7 hours 13 min ago. Offline
Joined: 11/15/2012
Groups: Foldit Staff
Here are the secondary structure predictions!

Here is the sequence logo predicted by the SAM server (ignore the last six Histidine residues, which are not present in this puzzle):

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

Note that these secondary structure predictions are not necessarily present in the server models that have been provided in the puzzle.

If you are a new Foldit player, please make sure you have completed all these tutorials before trying this puzzle:
- lonely sheets,
- lock and lower,
- rebuild,
- structure and rebuild,
- control over clashing.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons