Give open cutpoints a penalty
|Opened by:||Timo van der Laan|
|Opened on:||Sunday, February 9, 2014 - 08:23|
|Last modified:||Monday, February 10, 2014 - 23:00|
Sometimes an open cutpoint scores higher then when closed.
This breaks the following pseudo code:
set recent best
-idealize near the cutpoint
-do some more (local wiggles, shakes)
-close the cutpoint
-some more wiggles/shakes
-restore recent best
And do this again for another part of the protein.
In the restore operation you can end up with an unexpected open cutpoint
Also after this it possible that restore best score has an open cutpoint.
Giving a penalty of 50 pts for each open cutpoint, or 100 pts if any open cutpoints would making use of the new cutpoint functions a lot easier.