New client crashes on delete and inserts of 2 segments.

Case number:845829-996515
Topic:Crash/Hang
Opened by:Bletchley Park
Status:Open
Type:Bug
Opened on:Friday, December 27, 2013 - 01:28
Last modified:Thursday, August 10, 2017 - 23:14

Ah yes, a new client...

Remove some segments, add some segments, try to add 2. kaboom.

20131218-2687c5cae4-win_x86

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

Autosaved puzzles/0000996511/0000108474/wicked/autosave.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-best.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-recentbest.ir_solution.
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
delta_score: 0
Playing sound: 4
Tool on_action_complete called
Tool on_action_complete called

ERROR: Can't create a polymer bond after residue 185 due to incompatible type: VAL_p:CtermProteinFull
ERROR:: Exit from: ..\..\..\source\src\core\conformation\Conformation.cc line: 453

UNHANDLED EXCEPTION
1: RaiseException +88 bytes (no line)
2: library_main +30291461 bytes (no line)
3: library_main +28258273 bytes (no line)
4: library_main +26931131 bytes (no line)
5: library_main +20369997 bytes (no line)
6: library_main +4481147 bytes (no line)
7: library_main +4496901 bytes (no line)
8: library_main +6424859 bytes (no line)
9: library_main +6428829 bytes (no line)
10: library_main +4419918 bytes (no line)
11: library_main +4423062 bytes (no line)
12: BaseThreadInitThunk +18 bytes (no line)
13: RtlInitializeExceptionChain +99 bytes (no line)
14: RtlInitializeExceptionChain +54 bytes (no line)

(Fri, 12/27/2013 - 01:28  |  10 comments)


Joined: 05/19/2009
Groups: Contenders

and another one....

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.749534 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0904341 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.127936 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.074086 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.107669 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0723465 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.101359 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0695906 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
Autosaved puzzles/0000996511/0000108474/wicked/autosave.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-best.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-recentbest.ir_solution.
CB: 0.0971549 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0666492 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0931485 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0637901 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0893368 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0610541 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0856929 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0584472 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.082205 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0559728 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0787933 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.053644 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0755852 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0514529 1
delta_score: 0
Playing sound: 4
Tool on_action_complete called
Tool on_action_complete called

ERROR: Can't create a polymer bond after residue 183 due to incompatible type: VAL_p:CtermProteinFull
ERROR:: Exit from: ..\..\..\source\src\core\conformation\Conformation.cc line: 453

UNHANDLED EXCEPTION
1: RaiseException +88 bytes (no line)
2: library_main +30291461 bytes (no line)
3: library_main +28258273 bytes (no line)
4: library_main +26931131 bytes (no line)
5: library_main +20369997 bytes (no line)
6: library_main +4481147 bytes (no line)
7: library_main +4496901 bytes (no line)
8: library_main +6424859 bytes (no line)
9: library_main +6428829 bytes (no line)
10: library_main +4419918 bytes (no line)
11: library_main +4423062 bytes (no line)
12: BaseThreadInitThunk +18 bytes (no line)
13: RtlInitializeExceptionChain +99 bytes (no line)
14: RtlInitializeExceptionChain +54 bytes (no line)

Joined: 05/19/2009
Groups: Contenders

Wasn't this tested before it was released !?

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

blabla

Joined: 05/19/2009
Groups: Contenders

blablabla

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

This is all within 30 minutes of starting that 828 puzzle.
Come on !

Joined: 05/19/2009
Groups: Contenders

When the removal of a segment fails, and you retry another removal, this is repeatable.

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

Joined: 05/19/2009
Groups: Contenders

And yet anozzur one.

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

This time without any inserts or deletions... and without an exception message in the logfile.

NickyCGS's picture
User offline. Last seen 4 years 34 weeks ago. Offline
Joined: 06/27/2013
Groups: Repro-men

Hi Bletchley Park thank you for this feedback. I talked about this issue with Silverberg and others in chat today. I thought I'd ask here if you're seeing the same thing. The only reproduction of this issue that I've encountered is when attempting these changes on a residue near or on one of the initial cut-points that has been closed. My logs look identical to yours and I've pushed the issue on to the developers.

Joined: 06/24/2008
Groups: Void Crushers

I can delete on Structure 1 but cant delete on structure 2; I believe silver can not delete on structure 1; do not know if silver can delete on structure 2

brow42's picture
User offline. Last seen 4 days 1 hour ago. Offline
Joined: 09/19/2011
Groups: None

Actually, a fundamental problem is the widespread use of assertions in Rosetta, which is not really appropriate for anything other than experimental/expert use. It's probably a big job, but those should be handled differently.

Joined: 05/19/2009
Groups: Contenders

I just discovered another artifact, after loading the B puzzle again, and restoring structures from all loop to original, they are all wrong. The misnumbering theory seems plausible to me.

Joined: 03/05/2015
Groups: Gargleblasters

Same issue as this current thread?
http://fold.it/portal/node/2004011#comment-35217

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