New client crashes on delete and inserts of 2 segments.

Case number:845829-996515
Topic:Crash/Hang
Opened by:Bletchley Park
Status:Open
Type:Bug
Opened on:Friday, December 27, 2013 - 01:28
Last modified:Thursday, August 10, 2017 - 23:14

Ah yes, a new client...

Remove some segments, add some segments, try to add 2. kaboom.

20131218-2687c5cae4-win_x86

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

Autosaved puzzles/0000996511/0000108474/wicked/autosave.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-best.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-recentbest.ir_solution.
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<184 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 177 seconds: 0
CB: 0 1
delta_score: 0
Playing sound: 4
Tool on_action_complete called
Tool on_action_complete called

ERROR: Can't create a polymer bond after residue 185 due to incompatible type: VAL_p:CtermProteinFull
ERROR:: Exit from: ..\..\..\source\src\core\conformation\Conformation.cc line: 453

UNHANDLED EXCEPTION
1: RaiseException +88 bytes (no line)
2: library_main +30291461 bytes (no line)
3: library_main +28258273 bytes (no line)
4: library_main +26931131 bytes (no line)
5: library_main +20369997 bytes (no line)
6: library_main +4481147 bytes (no line)
7: library_main +4496901 bytes (no line)
8: library_main +6424859 bytes (no line)
9: library_main +6428829 bytes (no line)
10: library_main +4419918 bytes (no line)
11: library_main +4423062 bytes (no line)
12: BaseThreadInitThunk +18 bytes (no line)
13: RtlInitializeExceptionChain +99 bytes (no line)
14: RtlInitializeExceptionChain +54 bytes (no line)

(Fri, 12/27/2013 - 01:28  |  10 comments)


Joined: 05/19/2009
Groups: Contenders

and another one....

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.749534 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0904341 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.127936 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.074086 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.107669 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0723465 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.101359 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0695906 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
Autosaved puzzles/0000996511/0000108474/wicked/autosave.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-best.ir_solution.
Autosaved puzzles/0000996511/0000108474/wicked/autosave-recentbest.ir_solution.
CB: 0.0971549 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0666492 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0931485 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0637901 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0893368 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0610541 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0856929 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0584472 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.082205 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0559728 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0787933 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.053644 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0755852 1
protocols.indexed_structure_store.filters.FragmentLookupFilter: apply(pose=<185 residues>)
protocols.indexed_structure_store.filters.FragmentLookupFilter: lookup returned results: 178 seconds: 0
CB: 0.0514529 1
delta_score: 0
Playing sound: 4
Tool on_action_complete called
Tool on_action_complete called

ERROR: Can't create a polymer bond after residue 183 due to incompatible type: VAL_p:CtermProteinFull
ERROR:: Exit from: ..\..\..\source\src\core\conformation\Conformation.cc line: 453

UNHANDLED EXCEPTION
1: RaiseException +88 bytes (no line)
2: library_main +30291461 bytes (no line)
3: library_main +28258273 bytes (no line)
4: library_main +26931131 bytes (no line)
5: library_main +20369997 bytes (no line)
6: library_main +4481147 bytes (no line)
7: library_main +4496901 bytes (no line)
8: library_main +6424859 bytes (no line)
9: library_main +6428829 bytes (no line)
10: library_main +4419918 bytes (no line)
11: library_main +4423062 bytes (no line)
12: BaseThreadInitThunk +18 bytes (no line)
13: RtlInitializeExceptionChain +99 bytes (no line)
14: RtlInitializeExceptionChain +54 bytes (no line)

Joined: 05/19/2009
Groups: Contenders

Wasn't this tested before it was released !?

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

blabla

Joined: 05/19/2009
Groups: Contenders

blablabla

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

This is all within 30 minutes of starting that 828 puzzle.
Come on !

Joined: 05/19/2009
Groups: Contenders

When the removal of a segment fails, and you retry another removal, this is repeatable.

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

Joined: 05/19/2009
Groups: Contenders

And yet anozzur one.

Problem signature:
Problem Event Name: APPCRASH
Application Name: foldit.exe
Application Version: 0.0.0.0
Application Timestamp: 50d112ec
Fault Module Name: KERNELBASE.dll
Fault Module Version: 6.1.7601.17965
Fault Module Timestamp: 506dbe50
Exception Code: e06d7363
Exception Offset: 0000c41f
OS Version: 6.1.7601.2.1.0.256.48
Locale ID: 1043
Additional Information 1: 0a9e
Additional Information 2: 0a9e372d3b4ad19135b953a78882e789
Additional Information 3: 0a9e
Additional Information 4: 0a9e372d3b4ad19135b953a78882e789

This time without any inserts or deletions... and without an exception message in the logfile.

NickyCGS's picture
User offline. Last seen 4 years 22 weeks ago. Offline
Joined: 06/27/2013
Groups: Repro-men

Hi Bletchley Park thank you for this feedback. I talked about this issue with Silverberg and others in chat today. I thought I'd ask here if you're seeing the same thing. The only reproduction of this issue that I've encountered is when attempting these changes on a residue near or on one of the initial cut-points that has been closed. My logs look identical to yours and I've pushed the issue on to the developers.

Joined: 06/24/2008
Groups: Void Crushers

I can delete on Structure 1 but cant delete on structure 2; I believe silver can not delete on structure 1; do not know if silver can delete on structure 2

brow42's picture
User offline. Last seen 1 day 3 hours ago. Offline
Joined: 09/19/2011
Groups: None

Actually, a fundamental problem is the widespread use of assertions in Rosetta, which is not really appropriate for anything other than experimental/expert use. It's probably a big job, but those should be handled differently.

Joined: 05/19/2009
Groups: Contenders

I just discovered another artifact, after loading the B puzzle again, and restoring structures from all loop to original, they are all wrong. The misnumbering theory seems plausible to me.

actiasluna's picture
User offline. Last seen 15 hours 43 min ago. Offline
Joined: 03/05/2015
Groups: Gargleblasters

Same issue as this current thread?
http://fold.it/portal/node/2004011#comment-35217

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