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748: CASP ROLL R0039: Hand-folding Round
Status: Closed

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Joined: 05/09/2008
Groups: None
This protein comes from the organism: Staphylococcus aureus

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 76 is highly predicted to be part of a sheet. However, the Valine at residue 106 is weakly predicted to be in a helix!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).

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Joined: 05/09/2008
Groups: None
Additional info about this CASP ROLL target:

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casprol/target.cgi?id=84

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