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737: Unsolved Salmonella Bacteriophage: Freestyle Hand-folding Round
Status: Closed

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beta_helix's picture
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Joined: 05/09/2008
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More details:

Here are the secondary structure predictions predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 39 and 100 are highly predicted to be part of a helix. However, the Leucines at residues 39 and 82 are predicted to be part of a sheet!

marie_s's picture
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Joined: 05/18/2008
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beta_helix's picture
User offline. Last seen 1 day 6 hours ago. Offline
Joined: 05/09/2008
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thank you Marie

Hopefully I've fixed this and the secondary structure predictions now show up again!

Joined: 05/26/2008
Groups: Hold My Beer
It's good ! I am curious do

It's good ! I am curious do you have predictions of where the "correct" structure should score ?

beta_helix's picture
User offline. Last seen 1 day 6 hours ago. Offline
Joined: 05/09/2008
Groups: None
That is a great question...

but sadly your guess is as good as ours on this one.

The one thing that we can be sure of is that your solutions for Round 2 will score higher than this hand-folding round!

Joined: 05/26/2008
Groups: Hold My Beer
Thank you, just wondering if

Thank you,

just wondering if it's worth it to pursue it further, running out of steam on it.

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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