Here are the secondary structure predictions predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Leucines at residues 39 and 100 are highly predicted to be part of a helix. However, the Leucines at residues 39 and 82 are predicted to be part of a sheet!
Hopefully I've fixed this and the secondary structure predictions now show up again!
It's good ! I am curious do you have predictions of where the "correct" structure should score ?
but sadly your guess is as good as ours on this one.
The one thing that we can be sure of is that your solutions for Round 2 will score higher than this hand-folding round!
just wondering if it's worth it to pursue it further, running out of steam on it.