6 replies [Last post]
Joined: 03/15/2011

Hi, today i played Foldit for about one hour on Linux Mint 14 64 bit version with Linux Kernel 3.5.0 and Foldit was upgraded to the last version. I played Puzzle 730 (Blind Electron Density Puzzle 8) and i was able to play it every time for about 10 minutes on average and then the program crashes. This is the output of my terminal:

arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
Foldit Error: The game has previously not started up correctly.
If this problem persists, please install the latest version.
terminate called after throwing an instance of 'std::logic_error'
what(): basic_string::_S_construct null not valid
Annullato
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
Foldit Error: The game has previously not started up correctly.
If this problem persists, please install the latest version.
Errore di segmentazione
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
*** glibc detected *** ./Foldit: malloc(): smallbin double linked list corrupted: 0x0000000002619fe0 ***
Errore di segmentazione
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
*** glibc detected *** ./Foldit: double free or corruption (fasttop): 0x00000000016b1dc0 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x7eb96)[0x7fb30feb7b96]
/usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZNSsD1Ev+0x20)[0x7fb3107c7540]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZNK4core12conformation12Conformation11is_fullatomEv+0x35)[0x7fb30e899695]
*** glibc detected *** ./Foldit: double free or corruption (fasttop): 0x00000000016b1dc0 ***
======= Backtrace: =========
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN11interactive9pose_view20HydrophobicComposite18calculate_residuesEv+0x110)[0x7fb30ceab470]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZNK4core7scoring13ScoreFunction24eval_npd_atom_derivativeERKNS_2id6AtomIDERKNS_4pose4PoseERKN9ObjexxFCL8FArray1DIiEERN7numeric9xyzVectorIdEESI_+0x90)[0x7fb30e505db0]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN11interactive9pose_view20HydrophobicComposite11HydroThreadclEv+0x90)[0x7fb30ceabb70]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN4core12optimization29atom_tree_get_atompairE_derivERNS_4pose4PoseERNS0_12MinimizerMapERKNS_7scoring13ScoreFunctionE+0x29a)[0x7fb30de55baa]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN11interactive11application6Thread17thread_entry_funcEv+0x32)[0x7fb30ce79b92]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN4core12optimization15atom_tree_dfuncERNS_4pose4PoseERNS0_12MinimizerMapERKNS_7scoring13ScoreFunctionERKN7utility7vector1IdSaIdEEERSD_+0xc2)[0x7fb30de55e02]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN11interactive11application6Thread22pthread_startup_helperEPv+0x9)[0x7fb30ce79eb9]
cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZNK4core12optimization17AtomTreeMultifunc5dfuncERKN7utility7vector1IdSaIdEEERS5_+0x33)[0x7fb30de44723]
/lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7fb30ff2cccd]
======= Memory map: ========
00400000-00405000 r-xp 00000000 08:06 310593 /home/arena/Programmi/Foldit/Foldit
00604000-00605000 r--p 00004000 08:06 310593 /home/arena/Programmi/Foldit/Foldit
00605000-00606000 rw-p 00005000 08:06 310593 /home/arena/Programmi/Foldit/Foldit
015c8000-04adb000 rw-p 00000000 00:00 0 [heap]
418b0000-4192e000 rw-p 00000000 00:00 0
41c94000-41c96000 r-xs 00000000 08:06 390101 /tmp/glrb1exG (deleted)
7fb2a0000000-7fb2a056e000 rw-p 00000000 00:00 0
7fb2a056e000-7fb2a4000000 ---p 00000000 00:00 0
7fb2a7ffe000-7fb2a7fff000 rw-p 00000000 00:00 0
7fb2a8000000-7fb2a8161000 rw-p 00000000 00:00 0
7fb2a8161000-7fb2ac000000 ---p 00000000 00:00 0
7fb2b0000000-7fb2b0314000 rw-p 00000000 00:00 0
7fb2b0314000-7fb2b4000000 ---p 00000000 00:00 0
7fb2b4000000-7fb2b7fe1000 rw-p 00000000 00:00 0
7fb2b7fe1000-7fb2b8000000 ---p 00000000 00:00 0
7fb2b8000000-7fb2ba113000 rw-p 00000000 00:00 0
7fb2ba113000-7fb2bc000000 ---p 00000000 00:00 0
7fb2bebee000-7fb2bebf3000 r-xp 00000000 08:06 1632 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fb2bebf3000-7fb2bedf2000 ---p 00005000 08:06 1632 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fb2bedf2000-7fb2bedf3000 r--p 00004000 08:06 1632 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fb2bedf3000-7fb2bedf4000 rw-p 00005000 08:06 1632 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fb2bedf4000-7fb2bedfd000 r-xp 00000000 08:06 1660 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7fb2bedfd000-7fb2beffc000 ---p 00009000 08:06 1660 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7fb2beffc000-7fb2beffd000 r--p 00008000 08:06 1660 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7fb2beffd000-7fb2beffe000 rw-p 00009000 08:06 1660 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7fb2beffe000-7fb2bf7ff000 rw-p 00000000 00:00 0
7fb2bf9db000-7fb2bf9e4000 r-xp 00000000 08:06 1638 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fb2bf9e4000-7fb2bfbe4000 ---p 00009000 08:06 1638 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fb2bfbe4000-7fb2bfbe5000 r--p 00009000 08:06 1638 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fb2bfbe5000-7fb2bfbe6000 rw-p 0000a000 08:06 1638 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fb2bfc00000-7fb2c0000000 rw-s 3bff8000 00:05 9787 /dev/nvidia0
7fb2c0000000-7fb2c3e8f000 rw-p 00000000 00:00 0
7fb2c3e8f000-7fb2c4000000 ---p 00000000 00:00 0
7fb2c4230000-7fb2c8000000 rw-p 00000000 00:00 0
7fb2c8000000-7fb2cbff9000 rw-p 00000000 00:00 0
7fb2cbff9000-7fb2cc000000 ---p 00000000 00:00 0
7fb2cc230000-7fb2d0000000 rw-p 00000000 00:00 0
7fb2d0000000-7fb2d3fff000 rw-p 00000000 00:00 0
7fb2d3fff000-7fb2d4000000 ---p 00000000 00:00 0
7fb2d4000000-7fb2d8000000 rw-p 00000000 00:00 0
7fb2d8000000-7fb2dbffd000 rw-p 00000000 00:00 0
7fb2dbffd000-7fb2dc000000 ---p 00000000 00:00 0
7fb2dc000000-7fb2dfffb000 rw-p 00000000 00:00 0
7fb2dfffb000-7fb2e0000000 ---p 00000000 00:00 0
7fb2e0000000-7fb2e0021000 rw-p 00000000 00:00 0
7fb2e0021000-7fb2e4000000 ---p 00000000 00:00 0
7fb2e4000000-7fb2e7fff000 rw-p 00000000 00:00 0
7fb2e7fff000-7fb2e8000000 ---p 00000000 00:00 0
7fb2e8000000-7fb2e8021000 rw-p 00000000 00:00 0
7fb2e8021000-7fb2ec000000 ---p 00000000 00:00 0
7fb2ec000000-7fb2ec452000 rw-p 00000000 00:00 0
7fb2ec452000-7fb2f0000000 ---p 00000000 00:00 0
7fb2f0000000-7fb2f3fff000 rw-p 00000000 00:00 0
7fb2f3fff000-7fb2f4000000 ---p 00000000 00:00 0
7fb2f4000000-7fb2f4021000 rw-p 00000000 00:00 0
7fb2f4021000-7fb2f8000000 ---p 00000000 00:00 0
7fb2f8000000-7fb2f8021000 rw-p 00000000 00:00 0
7fb2f8021000-7fb2fc000000 ---p 00000000 00:00 0
7fb2fd77d000-7fb2fd77e000 ---p 00000000 00:00 0
7fb2fd77e000-7fb2fd8c1000 rw-p 00000000 00:00 0
7fb2fd8c1000-7fb2fd8c2000 ---p 00000000 00:00 0
7fb2fd8c2000-7fb2fda05000 rw-p 00000000 00:00 0 [stack:2888]
7fb2fda05000-7fb2fda06000 ---p 00000000 00:00 0
7fb2fda06000-7fb2fdb49000 rw-p 00000000 00:00 0 [stack:2824]
7fb2fdb49000-7fb2fdb4a000 ---p 00000000 00:00 0
7fb2fdb4a000-7fb2fdc8d000 rw-p 00000000 00:00 0 [stack:2823]
7fb2fdc8d000-7fb2fdc8e000 ---p 00000000 00:00 0
7fb2fdc8e000-7fb2fddd1000 rw-p 00000000 00:00 0 [stack:2822]
7fb2fddd1000-7fb2fe1d1000 rw-s 83372000 00:05 9787 /dev/nvidia0
7fb2fe1d1000-7fb2fe1d2000 ---p 00000000 00:00 0
7fb2fe1d2000-7fb2fe716000 rw-p 00000000 00:00 0 [stack:2821]
7fb2fe7d3000-7fb2fe7d4000 ---p 00000000 00:00 0
7fb2fe7d4000-7fb2fe917000 rw-p 00000000 00:00 0 [stack:2820]
7fb2fe917000-7fb2feb17000 rw-s 3be32000 00:05 9787 /dev/nvidia0
7fb2feb17000-7fb2feb1e000 r-xp 00000000 08:06 394078 /lib/x86_64-linux-gnu/libnss_dns-2.15.so
7fb2feb1e000-7fb2fed1d000 ---p 00007000 08:06 394078 /lib/x86_64-linux-gnu/libnss_dns-2.15.so
7fb2fed1d000-7fb2fed1e000 r--p 00006000 08:06 394078 /lib/x86_64-linux-gnu/libnss_dns-2.15.so
7fb2fed1e000-7fb2fed1f000 rw-p 00007000 08:06 394078 /lib/x86_64-linux-gnu/libnss_dns-2.15.so
7fb2fed1f000-7fb2fed21000 r-xp 00000000 08:06 392160 /lib/libnss_mdns4_minimal.so.2
7fb2fed21000-7fb2fef20000 ---p 00002000 08:06 392160 /lib/libnss_mdns4_minimal.so.2
7fb2fef20000-7fb2fef21000 r--p 00001000 08:06 392160 /lib/libnss_mdns4_minimal.so.2
7fb2fef21000-7fb2fef22000 rw-p 00002000 08:06 392160 /lib/libnss_mdns4_minimal.so.2
7fb2fef22000-7fb2fef2e000 r-xp 00000000 08:06 394060 /lib/x86_64-linux-gnu/libnss_files-2.15.so
7fb2fef2e000-7fb2ff12d000 ---p 0000c000 08:06 394060 /lib/x86_64-linux-gnu/libnss_files-2.cmp-binary-8092807ed9955ea3172d4ac852df736b/game_library.so(_ZN4core12optimization17AtomTreeMinimizer3runERNS_4pose4PoseERKNS_10kinematics7MoveMapERKNS_7scoring13ScoreFunctionERKNS0_16MinimizerOptionsE+0x64b)[0x7fb30de4294b]
Annullato
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
Errore di segmentazione
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
Errore di segmentazione
arena@arena-home-Pc ~/Programmi/Foldit $ ./Foldit
Errore di segmentazione

Is this related to something on my Pc or is it the program itself full of bugs??
This is the first time i post on this forum and i hope that i'm not posting in the wrong section.

beta_helix's picture
User offline. Last seen 43 min 46 sec ago. Offline
Joined: 05/09/2008
Groups: None
Have you tried other puzzles?

Puzzle 730 (Blind Electron Density Puzzle 8) is a particularly difficult puzzle.

Have you run into this problem with other puzzles, such as the Beginner ones?

This is where you want to post bug reports:
http://fold.it/portal/feedback

Joined: 09/20/2011
Groups: None
Freeze of program at exit (using linux

# foldit (repeatable) freezes at exit producing following: output
$ ./Foldit
*** glibc detected *** ./Foldit: corrupted double-linked list: 0x0000000002347470 ***

-----------------------------------------------------------------------------------------------------
$ uname -a
Linux rk13m14 3.5.0-34-generic #55-Ubuntu SMP Thu Jun 6 20:18:19 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
# running linux mint14

foldit version:
2013-06-12-e0a72c602f-linux_x64

Joined: 03/15/2011
beta_helix other puzzles

beta_helix other puzzles seems finer but i can't, for example, leave a recipe running over night because usually after half an hour i get some random crash.
cherry39 i also get this error every time i exit foldit.

Joined: 04/15/2012
Groups: Beta Folders
Post in feedback

"This is where you want to post bug reports:
http://fold.it/portal/feedback"

Please post it there as it is more likely to get looked at, and it's easier for the devs to keep things organized.

Joined: 09/20/2011
Groups: None
crash after automatic update

$ ./Foldit
Foldit Error: The game has previously not started up correctly.
If this problem persists, please install the latest version.
terminate called after throwing an instance of 'std::logic_error'
what(): basic_string::_S_construct null not valid
Aborted

-------------------------
"If this problem persists, please install the latest version." -
funny at this point -
I would rather be able to step back to the last running version.

Joined: 07/02/2013
Groups: None
I think there must be some

I think there must be some compatibility issue, have you checked it for that. Now Please check otherwise install it again.

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