puzzle picture
730: Blind Electron Density Puzzle 8
Status: Closed

Soloists



Need this puzzle? Log in to download.  

Comments

beta_helix's picture
User offline. Last seen 1 day 9 hours ago. Offline
Joined: 05/09/2008
Groups: None
Here are the secondary structure predictions!

As requested in the last Scientist Chat , here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Alanines at residues 117-119, 121-122 and 130 are highly predicted to be part of a helix. However, the Alanines at residues 3 and 80 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
__________________________________________

Cutaway view hint:
If you hover your mouse over a segment and type shift-Q, the game will hide parts of the protein and cloud that are not in the same plane as that segment - it cuts down on how much cloud you see at one time and makes it easier to focus. Q returns to normal view.

beta_helix's picture
User offline. Last seen 1 day 9 hours ago. Offline
Joined: 05/09/2008
Groups: None
Blogpost about these puzzles...
User login
Download links:
  Windows    OSX    Linux  
Windows
(7/8/10)
OSX
(10.12 or later)
Linux
(64-bit)

Are you new to Foldit? Click here.

Are you a student? Click here.

Are you an educator? Click here.
Social Media


Search
Only search fold.it
Other Games: Mozak
Recommend Foldit
Topics
Top New Users
Sitemap

Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons