puzzle picture
717: CASP ROLL Target R0034
Status: Closed

Soloists

RankPlayerGroupScorePoints
201Robcot 74 1534  10,9311
202Quackers 74 1534  10,9311
203AAymeric1995 74 1534  10,9311
204greepski 74 925 Gargleblasters10,9311
205NaD73 74 1534  10,9261
206Broussaille 74 1534  10,9191
207momadoc 74 925  10,9171
208Komsomolez 74 1534  10,9171
209larry25427 74 925  10,9171
210Thrianya 74 1534  10,9131
211f00barbob 74 1534 10,9121
212oaks 74 1534  10,9031
213Hiro Prota... 74 381  10,9001
214brow42 74 925  10,9001
215lavomancien 74 1534  10,8931
216Sancta 74 1534 Team China10,8861
217smith92clone 74 1534 Anthropic Dreams10,8831
218Tac1 74 925  10,8801
219Afrowolf 74 1534  10,8771
220Merf 74 74  10,8741
221Alisa Rosenbaum 74 1534  10,8711
222wadan 74 1534  10,8701
223CoachB 74 1534  10,8701
224AIDA64 74 1534  10,8551
225Sci1217 74 1534  10,8551


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Comments

beta_helix's picture
User offline. Last seen 1 day 18 hours ago. Offline
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Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casprol/target.cgi?id=78

____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 18, 54, 79 and 100 is highly predicted to be part of a helix. However, the Valine at residue 111 is not predicted to be anything!

The above predictions are already on the starting extended chain which is available in the Alignment Tool (based on the horizontal lines in the above figure).

bendbob's picture
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The information about this puzzle is incorrect, or ...

The puzzle information states: "this round only GUI scripts are allowed." This is not correct I am seeing regular LUA scripts run just fine.

beta_helix's picture
User offline. Last seen 1 day 18 hours ago. Offline
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Thank you for catching that bendbob

Sorry about that, the description should be correct now!

marie_s's picture
User offline. Last seen 2 years 6 weeks ago. Offline
Joined: 05/18/2008
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the alignment tool doesn't give the structure

and the extend is not is the reset cycle.

gramps's picture
User offline. Last seen 8 years 3 days ago. Offline
Joined: 12/16/2010
new public Recipe: 717 comment structs ...
beta_helix's picture
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Joined: 05/09/2008
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Explanation:

Because the Rosetta Server models do not match the secondary structure predictions, I did not want to bias you with Rosetta's structure.

The extended chain is only available in the alignment tool (for those who want it) but I did not want some players to randomly start with the extended chain if they didn't know they could reset to get a better model.
This is how we normally post CASP ROLL puzzles starting from Server Models (Puzzle 654, for example).
The extended chain does have the secondary structure predictions on it, however.

Thanks you gramps for providing that script for everyone!

marie_s's picture
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Joined: 05/18/2008
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The alignment tool doesn't give the structure

The alignment tool doesn't give the structure

http://fold.it/portal/files/chatimg/irc_33153_1369336157.png

beta_helix's picture
User offline. Last seen 1 day 18 hours ago. Offline
Joined: 05/09/2008
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that is indeed a bug!

I'm very sorry about that marie_s, I checked this before posting it, but clearly this isn't working correctly!

I'll look into what is going on, thankfully everyone can use gramps' script for now (good thing this wasn't a GUI-only round!)

dbuske's picture
User offline. Last seen 2 years 15 weeks ago. Offline
Joined: 09/22/2011
Groups: Beta Folders
Bug

I haven't been able to access puzzle for days.
Crashes on loading. Whole program crashes to desktop

beta_helix's picture
User offline. Last seen 1 day 18 hours ago. Offline
Joined: 05/09/2008
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I am very sorry to hear that, dbuske

Can you post your log.txt after the crash here:
http://fold.it/portal/node/995221

Hopefully we can figure out the issue!

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, Boehringer Ingelheim, RosettaCommons