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683: CASP10 Target T0709 Repost
Status: Closed

Summary

Name: 683: CASP10 Target T0709 Repost
Status: Closed
Created: 03/02/2013
Points: 100
Expired: 03/12/2013 - 23:00
Difficulty: Intermediate
Description: We are reposting this 33 residue CASP10 target to try out the new Disulfide Count Score Filter. We are giving you the top-predicted templates from 3 different alignment programs and you can see that they are all very similar. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

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Comments

Joined: 09/25/2012
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=113
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

You can see that these secondary structure predictions imply that this protein is mostly loop!
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1lu0
http://www.pdb.org/pdb/explore/explore.do?structureId=1w7z
http://www.pdb.org/pdb/explore/explore.do?structureId=1h9h

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons