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679: De-novo Freestyle 20
Status: Closed

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beta_helix's picture
User offline. Last seen 17 hours 48 min ago. Offline
Joined: 05/09/2008
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Here are the secondary structure predictions

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valine at residue 7 is highly predicted to be part of a helix. However, the Valines at residues 61, 73 & 86 are predicted to be part of a sheet!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).

brow42's picture
User offline. Last seen 2 years 8 weeks ago. Offline
Joined: 09/19/2011
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Puzzle is truncated

The structure prediction starts with QEIPAG and ends with QIRIDKINE. However, the first 3 segments and last 4 segments have been removed from the puzzle. This means the structure prediction is off by 3. I'm sure there will be recipes posted shortly that will reapply the correct predictions. Thanks to drumpeter and frood for noticing.

beta_helix's picture
User offline. Last seen 17 hours 48 min ago. Offline
Joined: 05/09/2008
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Nice catch

Thank you for catching this mistake!
I will repost the puzzle once the new SS predictions come back. You will be able to load in manually saves from this puzzle.

More details here: http://fold.it/portal/node/994549

Sorry for this mistake!

beta_helix's picture
User offline. Last seen 17 hours 48 min ago. Offline
Joined: 05/09/2008
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