651: Electron Density for CASP10 Target T0691 Round 2

Summary

Name:

Status:

Closed

Created:

11/09/2012

Points:

100

Expired:

11/17/2012 - 23:00

Difficulty:

Advanced

Description:

This is the second round of the density version of the CASP10 target T0691. This time, we've given you server models as starting points, and the density has been updated. The density in the last puzzle was being cut off at the wrong spot along one of the dimensions, and this time around, the density should contain one whole copy of the protein (it's in there somewhere!). Keep in mind that there are some pieces of density from other copies of the protein, and you'll have to figure out which parts actually belong. We're working on some exciting new tools that will allow you to edit which parts of the density you actually see, so stay tuned to the Developer Preview!

Categories:

Electron Density, Overall, Prediction

Rank

Group

Score

Points

Contenders

3,171

100

Anthropic Dreams

3,046

Go Science

2,765

L'Alliance Francophone

2,738

Team Hungary

2,703

Rank

Player

Group

Score

Points

Bletchley Park 22 19

Contenders

3,144

100

3,114

3,111

3,076

3,046

Rank

Player

Group

Score

Points

doug.ehlert 83 1767

Contenders

3,171

100

3,088

2,996

2,933

2,931

Sat, 11/10/2012 - 03:07

Timo van der Laan 83 24

Offline

Joined: 09/21/2011

Groups: Void Crushers

We have now 2 puzzles 649?

And how about the comment from someone that this one is really a dimer?

Sat, 11/10/2012 - 09:19

marie_s 83 1767

Offline

Joined: 05/18/2008

Groups: None

T691 is released

see here
http://predictioncenter.org/casp10/targetlist.cgi
here
http://foldit.wikia.com/wiki/Puzzle_647
here
http://foldit.wikia.com/wiki/Puzzle_572
and here
http://de.foldit.wikia.com/wiki/CASP10

and in the chat a few times.

Sun, 11/11/2012 - 05:44

jflat06 83 867

Offline

Joined: 09/29/2010

Groups: Window Group

Sorry about the numbering issue. This protein is actually a tetramer, not a dimer.

Sun, 11/11/2012 - 19:17

Bletchley Park 22 19

Offline

Joined: 05/19/2009

Groups: Contenders

reset puzzle vs threading list.

Would you please tell us which 'TMPL' from the threading window is which quark or zhang model from 'reset puzzle' ? And also which one is thus missing from the cycling of the 'reset puzzle'. It would save us a lot of time in figuring that out.

Sun, 11/11/2012 - 19:20

Bletchley Park 22 19

Offline

Joined: 05/19/2009

Groups: Contenders

eureka.

I just realized TMPL7 is the straight backbone template. question answered, thank you.

Thu, 11/15/2012 - 02:02

Susume 83 446

Offline

Joined: 10/02/2011

Groups: Anthropic Dreams

Do we know whether the

Do we know whether the proteins in the ED are arranged as a tetramer, or whether all the monomers face the same way? Do we know whether the ED includes the long leading helix (segments 1-27) which is missing from the published native?

I ask not just in reference to this puzzle, but in general if a protein is a polymer, will the ED have the proteins arranged into that polymer?