puzzle picture
645: CASP ROLL Target R0023
Status: Closed

Groups

RankGroupScorePoints
1Anthropic Dreams10,351100
2Contenders10,31485
3Go Science10,31271
4Beta Folders10,27360
5foldeRNA10,26549
6L'Alliance Francophone10,12741
7Clear the Way10,10833
8Void Crushers10,08627
9Gargleblasters10,04622
10Brony@Home9,89017
11Richard Dawkins Foundation9,81014
12Origami9,78611
13Team Hungary9,7658
14Freedom Folders9,7396
15Foldit UK9,7385
16FoldIt@Netherlands9,6824
17Russian team9,6603
18Natural Abilities9,6512
19SETI.Germany9,5322
20CHNO Junkies9,4261
21Androids9,3141
22Share Scores9,2561
23There Will Be Cake9,2491
24E?????! Heureka!8,9701
25xkcd8,9311


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beta_helix's picture
User offline. Last seen 4 days 11 hours ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=66
____________________________________________________

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 68 & 43 are highly predicted to be part of a sheet. However, the Valine at residue 25 is not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1sji http://www.pdb.org/pdb/explore/explore.do?structureId=2eua http://www.pdb.org/pdb/explore/explore.do?structureId=3ii2

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
Supported by: DARPA, NSF, NIH, HHMI, Amazon, Microsoft, Adobe, RosettaCommons