puzzle picture
643: CASP ROLL Target R0021
Status: Closed

Soloists

RankPlayerGroupScorePoints
226moonrise 46 1458  7,6901
227kmb8383 46 1458  7,6881
228screenshot 46 1458  7,6741
229Quixoticowl 46 1458 Nerdfighters7,6731
230Schnecke 46 1458  7,6701
231alegra 46 1458  7,6531
232unravelingthread 46 1458  7,6251
233Alagos 46 1458  7,6211
23410096 46 1458  7,6161
235RedTraitor 46 1458 Russian team7,5601
236foldingmaster1337 46 1458  7,5551
237joe_swan29 46 1458  7,5511
238k4t0n1 46 1458  7,5511
239merjantakamus 46 1458  7,5451
240user 46 1458  7,5431
241ygnobl 46 1458  7,5431
242Wisdomfighter 46 1458  7,5421
243birdy_ssr 46 1458  7,5381
244brainhack 46 1458  7,5341
245ZeroLeak7 46 97 7Monkeys7,5261
246GenericSubprocess 46 1458  7,5261
247KingCookie 46 1458  7,5261
248greepski 46 1458 Gargleblasters7,5261
249inuyasha10121 46 1458  7,5261
250Rosac 46 1458  7,5251


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beta_helix's picture
User offline. Last seen 1 week 21 hours ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=64

You'll notice that the sequence we have given you has been trimmed (compared to the one on the CASP ROLL website). This is because the N-terminus is predicted to be a signal peptide by the Rosetta Server:
http://rosettaserver.bakerlab.org/results.jsp?id=34067

For more info on that: http://en.wikipedia.org/wiki/Signal_peptide
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 1, 42 & 83 are highly predicted to be part of a sheet. However, the Valines at residues 9, 10 & 100 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3dxe http://www.pdb.org/pdb/explore/explore.do?structureId=2jgb http://www.pdb.org/pdb/explore/explore.do?structureId=3na2

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