puzzle picture
643: CASP ROLL Target R0021
Status: Closed

Soloists

RankPlayerGroupScorePoints
201xedr 60 2063 Anthropic Dreams8,3791
202BranVan 60 2063  8,3681
203aspadistra 60 2063 DSN @ Home8,3451
204spvincent 40 12 Contenders8,3101
205sbea3 60 2063  8,2941
206anselon 60 2063  8,2881
207scottyflash 60 2063  8,2721
208cannabudsguru 60 2063  8,2021
209crawlee34225 60 2063  8,2021
210momadoc 60 661  8,1901
211jackssss 60 2063 Curtin Crowd8,1861
212alvin4life 60 2063  8,1471
213phelpsc 60 2063  8,1331
214Susanne 60 2063 SETI.Germany8,1321
215carsonfb 60 306  8,1201
216samd 60 2063  8,1021
217jolajeppi 60 2063  7,9791
218kontro 60 2063  7,9341
219xythus 60 64  7,9211
220groveda 60 2063  7,8371
221ely227 60 2063  7,7951
222thekaiser 60 2063  7,7641
223theotherchuck 60 2063  7,7641
224EALs DAD 60 2063  7,7141
225Madde 60 2063 Void Crushers7,7021


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beta_helix's picture
User offline. Last seen 2 hours 45 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=64

You'll notice that the sequence we have given you has been trimmed (compared to the one on the CASP ROLL website). This is because the N-terminus is predicted to be a signal peptide by the Rosetta Server:
http://rosettaserver.bakerlab.org/results.jsp?id=34067

For more info on that: http://en.wikipedia.org/wiki/Signal_peptide
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 1, 42 & 83 are highly predicted to be part of a sheet. However, the Valines at residues 9, 10 & 100 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3dxe http://www.pdb.org/pdb/explore/explore.do?structureId=2jgb http://www.pdb.org/pdb/explore/explore.do?structureId=3na2

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