puzzle picture
643: CASP ROLL Target R0021
Status: Closed

Soloists

RankPlayerGroupScorePoints
176bergie72 62 1154  8,7781
177tela 62 2044  8,7761
178drumpeter18yrs9yrs 62 114 8,7731
179dbuske 62 2044 8,7661
180multaq 62 400 L'Alliance Francophone8,7601
181kdieber 62 2044  8,7481
182reefyrob 62 2044  8,6861
183twisted1 62 2044  8,6641
184vyv 62 2044  8,6581
185mr_hyde 62 2044  8,6151
186sirjeyhmis 62 2044 Geekdo8,6061
18713098328 62 2044 Curtin Crowd8,5711
188Nonsense 62 2044  8,5711
189Team ssq 62 2044  8,5011
190jmf028 62 2044  8,4901
191NAHA3 62 2044  8,4891
192Arne Heessels 62 220  8,4871
193Mark A 62 2044  8,4761
194steamywindow 62 2044  8,4731
195Amphimixus 62 2044  8,4701
196rgil 62 2044  8,4611
197Piman 62 2044  8,4471
198MalcolmW 62 2044  8,4451
199nmos1056 62 2044  8,4421
200armadillo314 62 2044  8,4271


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beta_helix's picture
User offline. Last seen 1 hour 42 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=64

You'll notice that the sequence we have given you has been trimmed (compared to the one on the CASP ROLL website). This is because the N-terminus is predicted to be a signal peptide by the Rosetta Server:
http://rosettaserver.bakerlab.org/results.jsp?id=34067

For more info on that: http://en.wikipedia.org/wiki/Signal_peptide
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 1, 42 & 83 are highly predicted to be part of a sheet. However, the Valines at residues 9, 10 & 100 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3dxe http://www.pdb.org/pdb/explore/explore.do?structureId=2jgb http://www.pdb.org/pdb/explore/explore.do?structureId=3na2

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