puzzle picture
643: CASP ROLL Target R0021
Status: Closed

Groups

RankGroupScorePoints
1Gargleblasters10,779100
2Contenders10,75086
3Void Crushers10,67573
4Beta Folders10,66762
5Anthropic Dreams10,64552
6L'Alliance Francophone10,63543
7foldeRNA10,56836
8Go Science10,52230
9FoldIt@Netherlands10,41124
10Clear the Way10,36620
11Richard Dawkins Foundation10,26316
12Curtin Crowd9,94813
13Origami9,89110
14Freedom Folders9,8448
15Brony@Home9,7306
16BOINC@Poland9,6615
17SETI.Germany9,5844
18GENE 4339,5743
19CHNO Junkies9,5452
20Russian team9,5302
21Natural Abilities9,5161
22Czech National Team8,9181
23Mojo Risin'8,8801
24E?????! Heureka!8,8021
25Share Scores8,7731


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beta_helix's picture
User offline. Last seen 3 hours 11 min ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP Roll target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casproll/target.cgi?id=64

You'll notice that the sequence we have given you has been trimmed (compared to the one on the CASP ROLL website). This is because the N-terminus is predicted to be a signal peptide by the Rosetta Server:
http://rosettaserver.bakerlab.org/results.jsp?id=34067

For more info on that: http://en.wikipedia.org/wiki/Signal_peptide
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 1, 42 & 83 are highly predicted to be part of a sheet. However, the Valines at residues 9, 10 & 100 are not predicted to be anything!

The above predictions are already on the starting model (based on the horizontal lines in the above figure).
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3dxe http://www.pdb.org/pdb/explore/explore.do?structureId=2jgb http://www.pdb.org/pdb/explore/explore.do?structureId=3na2

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