Here is the sequence logo predicted by the SAM server:
H = helix
E = sheet
C = loop (or coil)
The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.
For example, the Valines at residues 13, 31, 52 & 92-93 are highly predicted to be part of a helix. However, the Valine at residue 81 isn't predicted to be anything!
new public Recipe: 634 comment structs
I've put a detailed description of how I built this recipe into the recipe comments. Yes, marie, I know that needs to go into the wiki too :-)