634: Electron Density Puzzle 11

Summary

Name:

Status:

Closed

Created:

09/13/2012

Points:

100

Expired:

10/04/2012 - 12:00

Difficulty:

Intermediate

Description:

In this electron density puzzle, we're giving you some more realistic, noisy density. You'll have to use the electron density as a guide in order to find the correct fold. Try to find the best fit for the protein inside of the guide - but remember that since the density is noisy, it isn't always correct. We have posted the secondary structure predictions in the puzzle comments. Get started by completing the electron density intro level (5-3).

Categories:

Electron Density, Overall, Prediction

Rank

Group

Score

Points

Void Crushers

12,205

100

12,164

11,189

11,076

10,593

Rank

Player

Group

Score

Points

utaca 79 599

Void Crushers

12,205

100

12,164

12,156

12,100

12,086

Rank

Player

Group

Score

Points

steveB 79 1463

Void Crushers

12,197

100

12,159

12,153

11,626

11,306

Wed, 09/26/2012 - 23:42

beta_helix 79 1463

Offline

Joined: 05/09/2008

Groups: None

Please use these secondary structure predictions!

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 13, 31, 52 & 92-93 are highly predicted to be part of a helix. However, the Valine at residue 81 isn't predicted to be anything!