crash when wiggling on puzzle 627 with lots of cysteines using devprev

Case number:845829-993469
Topic:Crash/Hang
Opened by:pauldunn
Status:Closed
Type:Bug
Opened on:Monday, September 10, 2012 - 19:28
Last modified:Sunday, March 31, 2013 - 18:29

I have a solution for puzzle 627 with lots of cysteines that when loaded and wiggled crashes using devprev. The end of the log.txt file is below and the full log.txt file should be attached. If you would like the solution file, which file listed in the logfile is the correct one and how do I get it to a developer? I don't know if this is related to the crash in Feedback https://fold.it/portal/node/991395.

core.conformation.Conformation: current variant for 79 CYD
core.conformation.Conformation: current variant for 108 CYD
core.conformation.Conformation: Reverting out-of-date disulfide CYD to CYS at resid 106
ERROR: Could not find disulfide partner for residue 15
ERROR:: Exit from: ..\..\..\rosetta_source\src\core\scoring\disulfides\FullatomDisulfideEnergyContainer.cc line: 576

UNHANDLED EXCEPTION
1: library_main +15018590 bytes (no line)
2: library_main +15019479 bytes (no line)
3: library_main +9904711 bytes (no line)
4: library_main +9921015 bytes (no line)
5: library_main +9923200 bytes (no line)
6: library_main +5780089 bytes (no line)
7: library_main +5780356 bytes (no line)
8: library_main +11438020 bytes (no line)
9: library_main +11438646 bytes (no line)
10: library_main +8911396 bytes (no line)
11: library_main +8913335 bytes (no line)
12: library_main +4987400 bytes (no line)
13: library_main +4989291 bytes (no line)
14: library_main +4215154 bytes (no line)
15: library_main +4215734 bytes (no line)
16: BaseThreadInitThunk +18 bytes (no line)
17: RtlInitializeExceptionChain +99 bytes (no line)
18: RtlInitializeExceptionChain +54 bytes (no line)

AttachmentSize
log.txt432.72 KB
(Mon, 09/10/2012 - 19:28  |  11 comments)


beta_helix's picture
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Joined: 05/09/2008
Groups: None

assigning...

Joined: 03/18/2012
Groups: Gargleblasters

Same symptom in puzzle 670 on devprev, except that the log does not contain that message but:

basic.io.database: Database file opened: scoring/score_functions/disulfides/fa_SS_distance_score

I went back to 627, plugged in a single cysteine, and moved it closer to its mirror image: same crash.

spdenne's picture
User offline. Last seen 41 weeks 3 days ago. Offline
Joined: 10/01/2011
Groups: Void Crushers

This happens in main now too. My log ends with:

UNHANDLED EXCEPTION
1: library_main +19641742 bytes (no line)
2: library_main +4472467 bytes (no line)
3: library_main +1261013 bytes (no line)
4: library_main +3815325 bytes (no line)
5: library_main +4059686 bytes (no line)
6: library_main +916604 bytes (no line)
7: library_main +5909809 bytes (no line)
8: library_main +5871077 bytes (no line)
9: library_main +5882253 bytes (no line)
10: library_main +3784201 bytes (no line)
11: library_main +3580590 bytes (no line)
12: library_main +3478620 bytes (no line)
13: library_main +5634313 bytes (no line)
14: library_main +3477865 bytes (no line)
15: library_main +5640868 bytes (no line)
16: library_main +5643175 bytes (no line)
17: gapfnScSendMessage +1248 bytes (no line)
18: gapfnScSendMessage +1491 bytes (no line)
19: ChangeWindowMessageFilterEx +113 bytes (no line)
20: CallWindowProcW +28 bytes (no line)
21: glDebugEntry +4189 bytes (no line)
22: gapfnScSendMessage +1248 bytes (no line)
23: gapfnScSendMessage +1491 bytes (no line)
24: GetKeyboardLayout +2364 bytes (no line)
25: DispatchMessageA +15 bytes (no line)
26: library_main +5648579 bytes (no line)
27: library_main +3471085 bytes (no line)
28: library_main +24023 bytes (no line)
29: library_main +43 bytes (no line)
30: no symbol (no line)
31: no symbol (no line)
32: no symbol (no line)
33: BaseThreadInitThunk +14 bytes (no line)
34: RtlInitializeExceptionChain +133 bytes (no line)
35: RtlInitializeExceptionChain +88 bytes (no line)

spdenne's picture
User offline. Last seen 41 weeks 3 days ago. Offline
Joined: 10/01/2011
Groups: Void Crushers

I've crashed puzzle 670 three times trying to drag or move, not wiggle, a segment that is a cysteine, when there have only been a couple of them, not lots. I've also had puzzle 670 crash a few times while unattended, running recipes on 670, but I've not been aware of what the recipe was doing at the time. This has happened on two different Window 8 computers.

katfish's picture
User offline. Last seen 5 years 1 week ago. Offline
Joined: 01/09/2013
Status: Open » Open

Thanks, everyone. Working on getting this sorted out presently.

brow42's picture
User offline. Last seen 5 days 3 hours ago. Offline
Joined: 09/19/2011
Groups: None

I got a different error while using the move tool to combine monomers consisting of only cysteines:

ERROR: seqpos <= size()
ERROR:: Exit from: C:\cygwin\home\vmuser\foldit\mini-interactive-main-release\rosetta_source\src\core/conformation/Conformation.hh line: 289
ERROR: Rosetta exit unexpectedly

Joined: 11/10/2007
Groups: Window Group
Status: Open » Closed

We've made a number of fixes related to crashes with disulfides, particularly in symmetry puzzles. They will go out in an update soon.

Joined: 11/10/2007
Groups: Window Group
Status: Closed » Closed

We've made a number of fixes related to crashes with disulfides, particularly in symmetry puzzles. This has been released in the recent update.

tamirh's picture
User offline. Last seen 6 years 18 weeks ago. Offline
Joined: 05/11/2012
Status: Closed » Open

There's still a crash with many Cystines on the current devprev/main

1. Load puzzle 670 and reset
2. Mutate all to CYS
3. Wiggle and wait ~1 second
4. Crash

Joined: 11/10/2007
Groups: Window Group
Status: Open » Closed

This problem has been fixed.

Joined: 09/20/2010
Groups: Go Science
Status: Closed » Closed

Closing

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