puzzle picture
607: Beginner CASP10 Refinement Puzzle: TR747
Status: Closed

Groups

RankGroupScorePoints
1Anthropic Dreams10,636100
2Contenders10,63378
3Beta Folders10,60360
4foldeRNA10,59345
5Team Hungary10,54334
6Go Science10,54225
7L'Alliance Francophone10,54218
8FoldIt@Netherlands10,53313
9Void Crushers10,5299
10Gargleblasters10,4946
11Russian team10,4874
12SETI.Germany10,3853
13Another Hour Another Point10,3182
14SETIKAH@KOREA10,2761
15BOINC@Poland10,1811
16Natural Abilities10,1771
17Mojo Risin'10,0691
187Monkeys10,0201
19Czech National Team9,9741
20machinelves9,9451
21DSN @ Home9,9091
22Team Canada9,8701
23test_group17,3891
24null pointer exception7,3891
25Atlanta7,3891


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beta_helix's picture
User offline. Last seen 13 hours 28 min ago. Offline
Joined: 05/09/2008
Groups: None
More info here:

NOTE: The Cut Tool IS available for this puzzle, but only in the Developer Preview.
(If you want to try it out, please read "How do I try out the Foldit Developer Preview?" in the FAQ: http://fold.it/portal/info/faq )
Once the next update posts (early next week) the Cut Tool will be available in main.
__________________________________________________

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=204

Note that the organizers gave us this hint:

"Starting model GDT_TS=83."

GDT_TS=83 essentially means that ONLY 83% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 24, 46, 48, 90 & 92-93 are highly predicted to be part of a sheet. However, the Valine at residue 11 is predicted to be anything.

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