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604: CASP10 Refinement Puzzle: TR698
Status: Closed

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1Beta Folders10,802100
2Anthropic Dreams10,78378
3Go Science10,78160
4Contenders10,77845
5foldeRNA10,75834
6Russian team10,74325
7putting the eat in meat10,73518
8Void Crushers10,69913
9L'Alliance Francophone10,6789
10Team Hungary10,6616
11FoldIt@Netherlands10,6474
12Richard Dawkins Foundation10,6273
13Another Hour Another Point10,5332
14Gargleblasters10,4611
15Mojo Risin'10,4571
16SETI.Germany10,4441
17E?????! Heureka!10,4091
18Natural Abilities10,2581
19Team Canada10,2061
207Monkeys10,1941
21Czech National Team10,1751
22Skeptics Guide to the Universe10,1091
23DSN @ Home10,0811
24Geekdo10,0601
25Friday Lab8,2981


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beta_helix's picture
User offline. Last seen 19 hours 9 min ago. Offline
Joined: 05/09/2008
Groups: None
More info here:

Please note that the Cut Tool is available on this puzzle!

This is the page for this CASP10 refinement target:
http://predictioncenter.org/casp10/target.cgi?id=188

The CASP10 organizers gave us this hint:

"Starting model GDT_TS=65. Regions 17-35 and 90-100 need special attention."

GDT_TS=65 essentially means that 65% of the model superimposes correctly onto the native structure:
http://en.wikipedia.org/wiki/Global_distance_test

Here is the sequence logo predicted by the SAM server:

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Valines at residues 23-25 & 104 are highly predicted to be part of a helix. However, the Valines at residues 91 & 95 are predicted to be in anything.

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