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600: CASP10 Target T0743
Status: Closed

Summary

Name: 600: CASP10 Target T0743
Status: Closed
Created: 07/11/2012
Points: 100
Expired: 07/25/2012 - 14:00
Difficulty: Intermediate
Description: Foldit's 600th puzzle is hopefully the last non-refinement CASP10 target! We are providing you with the top templates found by 3 different alignment programs. We will provide you with server predictions soon. More details about this CASP target are in the puzzle comments.
Categories: CASP10, Overall, Prediction

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RankGroupScorePoints
1Anthropic Dreams11,564100
2Void Crushers11,53376
3Contenders11,48058
4foldeRNA11,33343
5Go Science11,10332

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Comments

beta_helix's picture
User offline. Last seen 3 days 1 hour ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=168
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Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 22, 28, 78, 91 & 94 are highly predicted to be in a helix. However, the Leucines at residues 109 & 144 are predicted to be in a sheet.
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=3fh1
http://www.pdb.org/pdb/explore/explore.do?structureId=2cw9
http://www.pdb.org/pdb/explore/explore.do?structureId=3k7c

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Developed by: UW Center for Game Science, UW Institute for Protein Design, Northeastern University, Vanderbilt University Meiler Lab, UC Davis
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