puzzle picture
592: CASP10 Target T0730
Status: Closed

Soloists

RankPlayerGroupScorePoints
126RandyFithian 70 1873  9,4522
127madpenguin 70 1873 Extraterrestrials9,4422
128GreekCivilization 70 1873  9,4391
129ilu99 70 1873  9,3831
130FScot 70 1873  9,3821
131kikica 70 1873  9,3791
132jecauril 70 1873  9,3081
133JameAlec 70 1873  9,2781
134ZeddicusZulZorrandr 70 1873 Contenders9,2701
135deLaCeiba 70 1873  9,2471
136Ben666 70 1873  9,2381
137sbea3 70 1873  9,2371
138monkry 70 1873  9,2331
139martinf 70 1873  9,2201
140mirjamvandelft 70 1873  9,2101
141Seneca 70 1873 Crunching Family9,1731
142deathbat_87 70 591 Skeptics Guide to the Universe9,1561
143MalcolmW 70 1873  9,1361
144Corruption 70 1873  9,1071
145Tac1 70 1873  9,0251
146larry25427 70 1873  8,9931
147rinze 70 84  8,9441
148Dark Draco 70 1873  8,9431
149nmos1056 70 1873  8,8721
150Anathael 70 1873  8,8441


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beta_helix's picture
User offline. Last seen 1 day 5 hours ago. Offline
Joined: 05/09/2008
Groups: None
Additional info about this CASP target

Here is the CASP link for this target (showing the amino acid sequence):
http://predictioncenter.org/casp10/target.cgi?id=150
____________________________________________________

Here is the sequence logo predicted by the SAM server.

H = helix
E = sheet
C = loop (or coil)

The taller the letter at each position, the higher the probability of that specific secondary structure for that amino acid.

For example, the Leucines at residues 7, 13 & 18 are highly predicted to be in a helix. However, the Leucines at residues 46, 129, 134 & 149 are predicted to be in a sheet.
____________________________________________________

Link to template PDBs:

http://www.pdb.org/pdb/explore/explore.do?structureId=1nep
http://www.pdb.org/pdb/explore/explore.do?structureId=3pdd
http://www.pdb.org/pdb/explore/explore.do?structureId=3qc5
http://www.pdb.org/pdb/explore/explore.do?structureId=2l3b

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